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Published November 12, 2021 | Version v0.11.20
Software Open

AMICI: High-Performance Sensitivity Analysis for Large Ordinary Differential Equation Models

Description

New:

  • Changed parameter mappings such that unassigned values have non-nan default values. This fixes erroneous evaluation of llh as NaN in some situations (#1574)
  • Added support for Python 3.10 (#1555)

Fixes:

  • Fixed a bug when simulation start time was not transferred when copying a solver instance (#1573)
  • Fixed a bug which led to incorrect sensitivies for models with multiple assignment rules or rate rules (#1584)

Other:

  • Update CI and documentation settings (#1569, #1527, #1572, #1575, #1579, #1580, #1589, #1581)
  • Extend set of validated benchmark models that is checked during CI (#1571, #1577)
  • Fixed string formatting in derivative checks (#1585)
  • Added helper methods to save and restore model instance-only settings (#1576)

Notes

If you use this software, please cite both the article from preferred-citation and the software itself.

Files

AMICI-dev/AMICI-v0.11.20.zip

Files (6.9 MB)

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md5:b93914754307818e6cae1cc1f9b2975f
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Additional details

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