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Published November 10, 2021 | Version v2.4.1
Software Open

fmalmeida/bacannot: fmalmeida/bacannot v2.4.1

  • 1. University of Brasilia @compgenunb

Description

The pipeline

bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software for comprehensively annotating prokaryotic genomes having only Docker and Nextflow as dependencies. It is able to annotate and detect virulence and resistance genes, plasmids, genomic islands, prophages, ICEs, KO, and more.

Release notes

Super small fix to properly load YAML file when using the pipeline with cloud computing environments such as AWS/S3-bucket:

```groovy

from

parameter_yaml = new FileInputStream(new File(params.in_yaml))

to

parameter_yaml = file(params.in_yaml).readLines().join("\n")

Files

fmalmeida/bacannot-v2.4.1.zip

Files (24.6 MB)

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Additional details

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