fmalmeida/bacannot: fmalmeida/bacannot v2.4.1
Description
bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software for comprehensively annotating prokaryotic genomes having only Docker and Nextflow as dependencies. It is able to annotate and detect virulence and resistance genes, plasmids, genomic islands, prophages, ICEs, KO, and more.
Release notesSuper small fix to properly load YAML file when using the pipeline with cloud computing environments such as AWS/S3-bucket:
```groovy
fromparameter_yaml = new FileInputStream(new File(params.in_yaml))
toparameter_yaml = file(params.in_yaml).readLines().join("\n")
Files
fmalmeida/bacannot-v2.4.1.zip
Files
(24.6 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/fmalmeida/bacannot/tree/v2.4.1 (URL)