Published July 31, 2017
| Version v1
Dataset
Open
Borrelia strain diversity
Authors/Creators
- 1. Yale School of Public Health
- 2. Simon Fraser University
Description
Simulated sequence data for testing Bb strain diversity method, all in FASTQ format.
- Included are read sets from 3 whole genomes (B31, JD1, N40) x 10 replicates of each. B31_01_R1.fq.bz1 (Genome B31, replicate 1, read 1). These files are compressed with http://www.linfo.org/bzip2.html and can be decompressed with bzip2 -d file.bz2 .
- Also included are reads from all 32 ospC types and subtypes (single replicate of each, uncompressed).
- Mixes of reads from ospC types are also included. They are named according to the genotypes and fractions they contain: BA.01.99_ospC_1.fq is 1% ospC type B, 99% ospC type A for example, and contains the 1st read pair of the paired FASTQ reads (the paired reads are in the file BA.01.99_ospC_2.fq).
Files
Files
(2.2 GB)
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