Published November 7, 2021 | Version v2.0
Software Open

nowling-lab/asaph: v2.0

Authors/Creators

  • 1. Milwaukee School of Engineering

Description

Stable release of v2.0.

Major changes in v2.0 include:

  • New boundary detection algorithm that enables precise localization of inversions
  • Use feature hashing to construct reduced dimensionality feature matrix which significantly reduces memory usage
  • Use scipy's one-way ANOVA test for association testing which is much, much faster
  • Refactor code so that it is installable with setuptools
  • Refactor scripts and their commands for easier understanding
  • Updated inversion benchmarks to add Plink bed and inveRsion text output formats
  • Improved documentation

Files

nowling-lab/asaph-v2.0.zip

Files (63.0 kB)

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Additional details

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