There is a newer version of the record available.

Published May 28, 2021 | Version 0.0.21
Software Open

clinker & clustermap.js: automatic generation of gene cluster comparison figures

Description

  • Added -gf/--gene_functions argument for grouping genes by shared function/category, instead of just sequence similarity.

Given a 2-column CSV resembling:

Gene Function
GENE_001 Cytochrome P450
GENE_002 Cytochrome P450
GENE_003 Methyltransferase
GENE_004 Methyltransferase
... ...

Two groups are generated, Cytochrome P450 (GENE_001 and 002), and Methyltransferase (GENE_003, GENE_004).

  • Updated clustermap.js. Gene groups now have tooltips when the corresponding label in the legend is clicked, and can now be easily merged to combine groups that share some function/category that did not group together by similarity alone

Notes

If you use this software, please cite it as below.

Files

gamcil/clinker-v0.0.23.zip

Files (2.9 MB)

Name Size Download all
md5:9f06f284cde5973bb6c567f2825436da
2.9 MB Preview Download

Additional details

Related works