Published May 28, 2021
| Version 0.0.21
Software
Open
clinker & clustermap.js: automatic generation of gene cluster comparison figures
Authors/Creators
Description
- Added
-gf/--gene_functionsargument for grouping genes by shared function/category, instead of just sequence similarity.
Given a 2-column CSV resembling:
| Gene | Function |
|---|---|
| GENE_001 | Cytochrome P450 |
| GENE_002 | Cytochrome P450 |
| GENE_003 | Methyltransferase |
| GENE_004 | Methyltransferase |
| ... | ... |
Two groups are generated, Cytochrome P450 (GENE_001 and 002), and Methyltransferase (GENE_003, GENE_004).
- Updated clustermap.js. Gene groups now have tooltips when the corresponding label in the legend is clicked, and can now be easily merged to combine groups that share some function/category that did not group together by similarity alone
Notes
Files
gamcil/clinker-v0.0.23.zip
Files
(2.9 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:9f06f284cde5973bb6c567f2825436da
|
2.9 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/gamcil/clinker/tree/v0.0.23 (URL)