De Novo Assembly of Plasmodium knowlesi Genomes From Clinical Samples Explains the Counterintuitive Intrachromosomal Organization of Variant SICAvar and kir Multiple Gene Family Members
Creators
- 1. University of St. Andrews
- 2. Department of Experimental Cardiology, University Medical Center Utrecht,
- 3. London School of Hygiene and Tropical Medicine
Description
Published DOI: https://doi.org/10.3389/fgene.2022.855052
Supporting data for the attached publication. De Novo assembled genomes of Plasmodium knowlesi generated using Nanopore long reads. Supporting statistical results are included. Variant call files from structural variant calls are attached for each genome. Additionally, statistical results from BUSCO, QUAST, Pomoxis and AGAT are included. Annotation files in GFF3 format including further analyses of these annotation files are attached. Scripts for post analysis are attached with scripts for data generation presented on Github repository: "Pknowlesi_denovo_genome_assembly"
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Additional details
Related works
- Is supplement to
- https://github.com/damioresegun/Pknowlesi_denovo_genome_assembly (URL)
Funding
- Characterisation of parasite and host determinants of severe Plasmodium knowlesi malaria G0801971
- UK Research and Innovation
- Institutional Strategic Support Fund 204821
- Wellcome Trust