Published March 8, 2021
| Version v3
Dataset
Open
LMAS Test Dataset
Authors/Creators
- 1. Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal
Contributors
Project leader:
Project member (4):
- 1. nstituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Lisboa, Portugal
- 2. Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel
Description
LMAS is an automated workflow enabling the benchmarking of traditional and metagenomic prokaryotic de novo assembly software using defined mock communities.
As proof of concept, the eight bacterial genomes and four plasmids, in tripled form, of the ZymoBIOMICS Microbial Community Standards are made available to be used as reference. Simulated raw sequence data of the mock communities with evenly distributed reads, generated from the reference genomes, with and without error, were obtained with inSilicoSeq.
Project repository: https://github.com/cimendes/LMAS
Files
about.md
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