Code for: Emergent dual scaling of riverine biodiversity

README

• Article information
• File descriptions
• License
• Session information

Article information

Title: Emergent dual scaling of riverine biodiversity

Author: Akira Terui, Seoghyun Kim, Christine L. Dolph, Taku Kadoya, Yusuke Miyazaki

File descriptions

See metadata.html (to view metadata.html, clone the repository and open metadata.html from your local computer). Note that the raw empirical data are not available in this repository due to licensing issues.

License

• Code - MIT License
• GIS layers adapted from the following materials are licensed under:
  • Copernicus Global Land Service: Creative Commons Attribution 4.0 International
  • WorldClim 1.4: Creative Commons Attribution-ShareAlike 4.0 International License
  • MERIT Hydro: Attribution-NonCommercial 4.0 International

Session information

## R version 4.1.0 (2021-05-18)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 19042)
## 
## Matrix products: default
## 
## locale:
## [1] LC_COLLATE=English_United States.1252 
## [2] LC_CTYPE=English_United States.1252   
## [3] LC_MONETARY=English_United States.1252
## [4] LC_NUMERIC=C                          
## [5] LC_TIME=English_United States.1252    
## 
## attached base packages:
## [1] parallel  stats     graphics  grDevices utils     datasets  methods  
## [8] base     
## 
## other attached packages:
##  [1] igraph_1.2.6      ggraph_2.0.5      iNEXT_2.0.20      avpc_0.0.1       
##  [5] kableExtra_1.3.4  knitr_1.33        doSNOW_1.0.19     snow_0.4-3       
##  [9] doParallel_1.0.16 iterators_1.0.13  mcbrnet_1.1.0     foreach_1.5.1    
## [13] here_1.0.1        broom_0.7.9       sf_0.9-7          patchwork_1.1.1  
## [17] forcats_0.5.1     stringr_1.4.0     dplyr_1.0.6       purrr_0.3.4      
## [21] readr_2.0.0       tidyr_1.1.3       tibble_3.1.2      ggplot2_3.3.5    
## [25] tidyverse_1.3.1  
## 
## loaded via a namespace (and not attached):
##  [1] fs_1.5.0           lubridate_1.7.10   webshot_0.5.2      httr_1.4.2        
##  [5] rprojroot_2.0.2    tools_4.1.0        backports_1.2.1    utf8_1.2.1        
##  [9] R6_2.5.0           KernSmooth_2.23-20 DBI_1.1.1          colorspace_2.0-1  
## [13] withr_2.4.2        gridExtra_2.3      tidyselect_1.1.1   compiler_4.1.0    
## [17] cli_3.0.1          rvest_1.0.1        pacman_0.5.1       xml2_1.3.2        
## [21] scales_1.1.1       classInt_0.4-3     proxy_0.4-26       systemfonts_1.0.2 
## [25] digest_0.6.27      rmarkdown_2.9      svglite_2.0.0      pkgconfig_2.0.3   
## [29] htmltools_0.5.1.1  dbplyr_2.1.1       rlang_0.4.11       readxl_1.3.1      
## [33] rstudioapi_0.13    farver_2.1.0       generics_0.1.0     jsonlite_1.7.2    
## [37] magrittr_2.0.1     Rcpp_1.0.7         munsell_0.5.0      fansi_0.5.0       
## [41] viridis_0.6.1      lifecycle_1.0.0    stringi_1.6.1      yaml_2.2.1        
## [45] MASS_7.3-54        plyr_1.8.6         grid_4.1.0         ggrepel_0.9.1     
## [49] crayon_1.4.1       graphlayouts_0.7.1 haven_2.4.1        hms_1.1.0         
## [53] pillar_1.6.2       reshape2_1.4.4     codetools_0.2-18   reprex_2.0.0      
## [57] glue_1.4.2         evaluate_0.14      modelr_0.1.8       tweenr_1.0.2      
## [61] vctrs_0.3.8        tzdb_0.1.2         cellranger_1.1.0   polyclip_1.10-0   
## [65] gtable_0.3.0       assertthat_0.2.1   xfun_0.23          ggforce_0.3.3     
## [69] tidygraph_1.2.0    e1071_1.7-7        class_7.3-19       viridisLite_0.4.0 
## [73] units_0.7-2        ellipsis_0.3.2