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Published April 24, 2017 | Version 1.1.0

gringer/bioinfscripts: Chimeric Read Update

Authors/Creators

Description

Updated code for improved processing of chimeric reads. Some useful scripts:

  • signal_viewer.r -- display raw signal for a given raw data file (assumes 16-bit integers)
  • porejuicer.py -- nanopore read processor; used for extracting fastq files and raw signal from fast5 files
  • maf_bcsplit.py -- converts LAST alignments to simplified and normalised CSV format containing start/end locations
  • posAggregate.py -- aggregates adjacent and similarly oriented matches in the output format of maf_bcsplit.py

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gringer/bioinfscripts-1.1.0.zip

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