There is a newer version of the record available.

Published June 9, 2020 | Version 0.9.5
Software Open

poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing

Authors/Creators

Description

  • support added for NEB varskip primer here
  • activate via --primerV VarSkipV1a see also --help for all supported schemes
  • example: nextflow run replikation/poreCov -r 0.11.1 --fastq_pass fastq_pass/ -profile local,docker
  • default for the amplicon inclusions:
    Min read-length set to: 350 [--minLength]
Max read-length set to: 700 [--maxLength]

Notes

If you use this software, please cite it as below.

Files

replikation/poreCov-0.11.1.zip

Files (1.7 MB)

Name Size Download all
md5:b108110ebb4f8fe785c72c105bdfe278
1.7 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/replikation/poreCov/tree/0.11.1 (URL)