obophenotype/uberon: 2021-10-01 Release

This is a patch release as a faulty ID made it into the release published yesterday (#2077). Some other Changes were merged in the meantime, as follows:

Changed introduced Peyer's patch epithelium http://purl.obolibrary.org/obo/UBERON_0004693 Removed

• Peyer's patch epithelium has_exact_synonym "Peyer's patch epithelium"^^string
  • database_cross_reference "MA:0000731"^^string

Added

• Peyer's patch epithelium has_exact_synonym "peyer's patch epithelium"^^string
  • database_cross_reference "MA:0000731"^^string

Peyer's patch follicle http://purl.obolibrary.org/obo/UBERON_0010386 Removed

• Peyer's patch follicle has_exact_synonym "Peyer's patch follicle"^^string
  • database_cross_reference "MA:0000732"^^string

Added

• Peyer's patch follicle has_exact_synonym "peyer's patch follicle"^^string
  • database_cross_reference "MA:0000732"^^string

articular surface for the tibia on the talus http://purl.obolibrary.org/obo/UBERON_7500081 Removed

• articular surface for the tibia on the talus id "UBERON:7500081"^^string

• articular surface for the tibia on the talus label "articular surface for the tibia on the talus"^^string

• articular surface for the tibia on the talus definition "Contact surface between the tibia and the talus located on the talus."^^string

  • database_cross_reference "https://en.wikipedia.org/wiki/Talus_bone"^^[string](http://www.w3.org/2001/XMLSchema#string)

• articular surface for the tibia on the talus term_editor 0000-0003-2699-3066

• articular surface for the tibia on the talus date "2021-07-27T17:04:35Z"^^dateTime

• articular surface for the tibia on the talus has_obo_namespace "uberon"^^string

• Class: articular surface for the tibia on the talus

• articular surface for the tibia on the talus SubClassOf articular surface

• articular surface for the tibia on the talus SubClassOf part_of some talus

• articular surface for the tibia on the talus SubClassOf surface of bone

cementocyte lacuna http://purl.obolibrary.org/obo/UBERON_8000008 Removed

• cementocyte lacuna label "cementocyte lacuna"^^string

• cementocyte lacuna id "UBERON:8000008"^^string

• cementocyte lacuna created_by "http://orcid.org/0000-0001-5208-3432"^^[string](http://www.w3.org/2001/XMLSchema#string)

• cementocyte lacuna has_obo_namespace "uberon"^^string

• cementocyte lacuna definition "The small cavity within the cellular cementum that is occupied by a cementocyte cell body."^^string

  • database_cross_reference "MP:0030555"^^string

  • database_cross_reference "PMID:27029548"^^string

• Class: cementocyte lacuna

• cementocyte lacuna SubClassOf part_of some cementum

• cementocyte lacuna SubClassOf anatomical cavity

copepodite stage 1 http://purl.obolibrary.org/obo/UBERON_8200002 Removed

• copepodite stage 1 label "copepodite stage 1"^^string

• copepodite stage 1 has_obo_namespace "uberon"^^string

• copepodite stage 1 creator 0000-0002-2908-3327

• copepodite stage 1 definition "A development stage of copepods which immediately follows the nauplius stage. It is characterized by the presence of 2 swimming legs."^^string

  • database_cross_reference "http://orcid.org/0000-0002-2908-3327"^^[string](http://www.w3.org/2001/XMLSchema#string)

• copepodite stage 1 date "2021-07-26T14:57:48Z"^^dateTime

• copepodite stage 1 id "UBERON:8200002"^^string

• Class: copepodite stage 1

• copepodite stage 1 SubClassOf preceded_by some nauplius stage

• copepodite stage 1 SubClassOf life cycle stage

• copepodite stage 1 SubClassOf part_of some copepodite stage

copepodite stage 2 http://purl.obolibrary.org/obo/UBERON_8200003 Removed

• copepodite stage 2 date "2021-07-26T15:07:18Z"^^dateTime

• copepodite stage 2 label "copepodite stage 2"^^string

• copepodite stage 2 creator 0000-0002-2908-3327

• copepodite stage 2 definition "A development stage of copepods which immediately follows copepodite stage 1. It is characterized by the presence of 3 swimming legs."^^string

  • database_cross_reference "http://orcid.org/0000-0002-2908-3327"^^[string](http://www.w3.org/2001/XMLSchema#string)

• copepodite stage 2 id "UBERON:8200003"^^string

• copepodite stage 2 has_obo_namespace "uberon"^^string

• Class: copepodite stage 2

• copepodite stage 2 SubClassOf part_of some copepodite stage

• copepodite stage 2 SubClassOf life cycle stage

• copepodite stage 2 SubClassOf preceded_by some copepodite stage 1

copepodite stage 3 http://purl.obolibrary.org/obo/UBERON_8200004 Removed

• copepodite stage 3 creator 0000-0002-2908-3327

• copepodite stage 3 definition "A development stage of copepods which immediately follows copepodite stage 2. It is characterized by the presence of 4 swimming legs."^^string

  • database_cross_reference "http://orcid.org/0000-0002-2908-3327"^^[string](http://www.w3.org/2001/XMLSchema#string)

• copepodite stage 3 id "UBERON:8200004"^^string

• copepodite stage 3 label "copepodite stage 3"^^string

• copepodite stage 3 date "2021-07-26T15:43:37Z"^^dateTime

• copepodite stage 3 has_obo_namespace "uberon"^^string

• Class: copepodite stage 3

• copepodite stage 3 SubClassOf part_of some copepodite stage

• copepodite stage 3 SubClassOf life cycle stage

• copepodite stage 3 SubClassOf preceded_by some copepodite stage 2

copepodite stage 4 http://purl.obolibrary.org/obo/UBERON_8200005 Removed

• copepodite stage 4 date "2021-07-26T15:45:12Z"^^dateTime

• copepodite stage 4 creator 0000-0002-2908-3327

• copepodite stage 4 has_obo_namespace "uberon"^^string

• copepodite stage 4 id "UBERON:8200005"^^string

• copepodite stage 4 label "copepodite stage 4"^^string

• copepodite stage 4 definition "A development stage of copepods which immediately follows copepodite stage 3. It is characterized by the presence of 5 swimming legs."^^string

  • database_cross_reference "http://orcid.org/0000-0002-2908-3327"^^[string](http://www.w3.org/2001/XMLSchema#string)

• Class: copepodite stage 4

• copepodite stage 4 SubClassOf life cycle stage

• copepodite stage 4 SubClassOf preceded_by some copepodite stage 3

• copepodite stage 4 SubClassOf part_of some copepodite stage

copepodite stage 5 http://purl.obolibrary.org/obo/UBERON_8200006 Removed

• copepodite stage 5 date "2021-07-26T15:46:40Z"^^dateTime

• copepodite stage 5 label "copepodite stage 5"^^string

• copepodite stage 5 definition "A pre-adult stage of copepods which immediately follows copepodite stage 4. It is characterized by enlargement of the urosome and development of sexual organs."^^string

  • database_cross_reference "http://orcid.org/0000-0002-2908-3327"^^[string](http://www.w3.org/2001/XMLSchema#string)

• copepodite stage 5 id "UBERON:8200006"^^string

• copepodite stage 5 creator 0000-0002-2908-3327

• copepodite stage 5 has_obo_namespace "uberon"^^string

• Class: copepodite stage 5

• copepodite stage 5 SubClassOf preceded_by some copepodite stage 4

• copepodite stage 5 SubClassOf life cycle stage

• copepodite stage 5 SubClassOf part_of some post-juvenile adult stage

copepodite stage 6 http://purl.obolibrary.org/obo/UBERON_8200007 Removed

• copepodite stage 6 id "UBERON:8200007"^^string

• copepodite stage 6 date "2021-07-26T15:48:54Z"^^dateTime

• copepodite stage 6 definition "A fully formed stage of copepods which immediately follows copepodite stage 5. It is characterized by the complete development of the fifth swimming leg."^^string

  • database_cross_reference "http://orcid.org/0000-0002-2908-3327"^^[string](http://www.w3.org/2001/XMLSchema#string)

• copepodite stage 6 has_obo_namespace "uberon"^^string

• copepodite stage 6 creator 0000-0002-2908-3327

• copepodite stage 6 label "copepodite stage 6"^^string

• Class: copepodite stage 6

• copepodite stage 6 SubClassOf life cycle stage

• copepodite stage 6 SubClassOf part_of some fully formed stage

• copepodite stage 6 SubClassOf preceded_by some copepodite stage 5

cornea http://purl.obolibrary.org/obo/UBERON_0000964 Removed

• cornea SubClassOf surface structure

Added

• cornea SubClassOf surface structure
  • source "XAO"^^string

crypt of Lieberkuhn http://purl.obolibrary.org/obo/UBERON_0001983 Removed

• crypt of Lieberkuhn has_exact_synonym "follicles of Lieberkühn"^^string

• crypt of Lieberkuhn has_exact_synonym "Lieberkühn crypt"^^string

Added

• crypt of Lieberkuhn has_exact_synonym "lieberkuhn crypt"^^string

• crypt of Lieberkuhn has_exact_synonym "follicles of lieberkuhn"^^string

crypt of Lieberkuhn of large intestine http://purl.obolibrary.org/obo/UBERON_0001984 Removed

• crypt of Lieberkuhn of large intestine has_exact_synonym "large intestine Lieberkühn crypt"^^string

  • database_cross_reference "OBOL:automatic"^^string

• crypt of Lieberkuhn of large intestine has_exact_synonym "Lieberkühn crypt of large intestine"^^string

  • database_cross_reference "OBOL:automatic"^^string

• crypt of Lieberkuhn of large intestine definition "A crypt of Lieberkühn that is part of a large intestine [Automatically generated definition]."^^string

  • database_cross_reference "OBOL:automatic"^^string

Added

• crypt of Lieberkuhn of large intestine has_exact_synonym "lieberkuhn crypt of large intestine"^^string

  • database_cross_reference "OBOL:automatic"^^string

• crypt of Lieberkuhn of large intestine has_exact_synonym "large intestine lieberkuhn crypt"^^string

  • database_cross_reference "OBOL:automatic"^^string

• crypt of Lieberkuhn of large intestine definition "A crypt of lieberkuhn that is part of a large intestine [Automatically generated definition]."^^string

  • database_cross_reference "OBOL:automatic"^^string

crypt of Lieberkuhn of small intestine http://purl.obolibrary.org/obo/UBERON_0001241 Removed

• crypt of Lieberkuhn of small intestine has_exact_synonym "Lieberkühn crypt of small intestine"^^string

  • database_cross_reference "OBOL:automatic"^^string

• crypt of Lieberkuhn of small intestine has_exact_synonym "small bowel Lieberkühn crypt"^^string

  • database_cross_reference "OBOL:automatic"^^string

• crypt of Lieberkuhn of small intestine has_exact_synonym "small intestine Lieberkühn crypt"^^string

  • database_cross_reference "OBOL:automatic"^^string

• crypt of Lieberkuhn of small intestine has_exact_synonym "Lieberkühn crypt of small bowel"^^string

  • database_cross_reference "OBOL:automatic"^^string

Added

• crypt of Lieberkuhn of small intestine has_exact_synonym "lieberkuhn crypt of small intestine"^^string

  • database_cross_reference "OBOL:automatic"^^string

• crypt of Lieberkuhn of small intestine has_exact_synonym "lieberkuhn crypt of small bowel"^^string

  • database_cross_reference "OBOL:automatic"^^string

• crypt of Lieberkuhn of small intestine has_exact_synonym "small bowel lieberkuhn crypt"^^string

  • database_cross_reference "OBOL:automatic"^^string

• crypt of Lieberkuhn of small intestine has_exact_synonym "small intestine lieberkuhn crypt"^^string

  • database_cross_reference "OBOL:automatic"^^string

metacarpophalangeal joint http://purl.obolibrary.org/obo/UBERON_0003695 Removed

• metacarpophalangeal joint has_exact_synonym "knuckles"^^string

  • has_synonym_type plural term

  • database_cross_reference "https://orcid.org/0000-0001-5208-3432"^^[string](http://www.w3.org/2001/XMLSchema#string)

• metacarpophalangeal joint has_exact_synonym "knuckle"^^string

  • database_cross_reference "https://orcid.org/0000-0001-5208-3432"^^[string](http://www.w3.org/2001/XMLSchema#string)

trochlea of talus http://purl.obolibrary.org/obo/UBERON_7500063 Removed

• trochlea of talus SubClassOf articular surface for the tibia on the talus

Added

• trochlea of talus SubClassOf surface of bone

• trochlea of talus SubClassOf articular surface

• trochlea of talus SubClassOf part_of some talus