Published October 15, 2021
| Version 1.6.135
Software
Open
SCHNAPPs - Single Cell sHiNy APPlication(s)
Description
Shiny app for the exploration and analysis of single cell RNAseq data as it comes from 10X or MARSseq technologies. It is currently being developed based on user requests of the Cytometry and Biomarkers UTechS at the Institut Pasteur, Paris. The goal is to enable the users of our platform to explore their data, select cells they would like to work with and then perform the final analysis together with the bioinformatics support at Institut Pasteur.
Notes
Open Virtualization Format 2.0
SCHNAPPs virtual machine.
Start the VM and access SCHNAPPs at http://localhost:6149/ using your local browser.
Tested with Chrome.
Important:
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Make sure the shared folders are set correctly. history and data directory are both needed.
Inside the VM, one can perform updates and set specific parameters.
Notes:
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main user: schnapps
pwd: schnapps123
ssh -p 1111 schnapps@localhost
in case of problem edit the .ssh/host known_hosts file
Files
Files
(10.4 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:22287cdde05f70d0a329f8e49e1f8d0b
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10.4 GB | Download |