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Published September 28, 2021 | Version v2.3.2
Software Open

fmalmeida/bacannot: fmalmeida/bacannot v2.3.2

  • 1. University of Brasilia @compgenunb

Description

The pipeline

bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software for comprehensively annotating prokaryotic genomes having only Docker and Nextflow as dependencies. It is able to annotate and detect virulence and resistance genes, plasmids, genomic islands, prophages, ICEs, KO, and more.

Release notes
  1. There is a smal fix in the update_database_image.sh so it takes only the first two numbers of release tags.
  2. Changed the pipeline to now accept the resfinder species panel "Other"
  3. Fixed the Resfinder report to understand when only the pointfinder mutations are empty.

Files

fmalmeida/bacannot-v2.3.2.zip

Files (11.3 MB)

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md5:3836e2d44fe8c47c91ad8768fc4b8593
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Additional details

Related works