Published September 24, 2021
| Version v1
Dataset
Open
Annotation results of two human retina organoids
Description
Cell annotation was based on i) marker genes which were extracted from literature and expert knowledge, or (ii) via a transfer learning tool CaSTLe (Lieberman Y, Rokach L, Shay T, 2018) using the Cowan et al. (2020) organoid reference data set.
Data preprocessing of both scRNA-seq data sets was done in scanpy (Wolf, F., Angerer, P. & Theis, 2018), and are included as h5ad-files.
The annotation results are included in the .csv files
Files
Chapter9_CaSTLe_Annot_HRO2.csv
Files
(216.8 MB)
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md5:475f2154161bdb8646a249a9ff194141
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93.4 MB | Download |
Additional details
References
- Cowan, C. S. et al. (2020). Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution. Cell , 182, 1623–1640.e34.