Published August 1, 2021
| Version 1.0
Software
Open
DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation
Authors/Creators
- 1. The Jackson Laboratory for Genomic Medicine
- 2. St. Jude Children's Research Hospital
- 3. Weill Cornell Medicine
- 4. University of Pennsylvania
- 5. The Jackson Laboratory Cancer Center
Description
File list
- nanome.zip: source code of paper, also available at GitHub https://github.com/liuyangzzu/nanome.
- C.tar.gz: The genome motif generated by DeepMod cluster model for 5mC prediction in human genome.
- dna_r9.4.1_450bps_hac.cfg: Guppy base-calling model configuration files used in paper.
- genome-annotation.tar.gz: Genome annotation files.
- model.CpG.R9.4_1D.human_hx1.bn17.sn360.v0.1.7+.tar: DeepSignal methylation-calling model files used in paper.
- megalodon_model.tar.gz: Megalodon model configuration files used in paper.
- reference_genome.tar.gz: Reference genome of Human and E. coli.
- ecoli.tar.gz: Reference genome of E. coli.
- hg38.tar.gz: Reference genome of Human.
- ecoli_data_from_meteore.tar.gz: E. coli data (100 reads) from METEORE paper.
- ecoli_fast5_test.tar.gz: E. coli data (10 reads)
*Correspondence should be addressed to S.L. (sheng.li@jax.org).
Files
nanome.zip
Files
(11.6 GB)
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