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Published September 2, 2021 | Version v2.1.1

callahantiff/PheKnowLator: v2.1.1

  • 1. CU Anschutz Medical Campus
  • 2. Università degli Studi di Milano

Description

Release: v2.1.1

Website: https://github.com/callahantiff/PheKnowLator/wiki/v2.0.0 Data Access: Google Cloud Storage -- PheKnowLator Bucket Docker Container: DockerHub Dedicated Project Container PyPI: pkt-kg 2.1.1

Updated Jupyter Notebooks:

Updated Scripts:

  • pkt_kg/owlnets.py
  • pkt_kg/utils/kg_utils.py
Updates
  • For the owlnets.py script, three new hyperparameters were added to provide users with more flexibility in terms of what support, top, and relation ontology objects are included in an OWL-NETS graph. The pruning functions were also improved to make sure that metadata are not getting through (i.e., obsolete classes and XML Schema).
  • For the OWLNETS_Example_Application.ipynb Jupyter Notebook, new functionality was added to include node and relation definitions.
  • Added new function to obtain the definitions for all owl:Class and owl:ObjectProperty objects to 'pkt_kg/utils/kg_utils.py`

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Example of New Functionality:
<img width="800" alt="Screen Shot 2021-09-02 at 01 28 24" src="https://user-images.githubusercontent.com/8030363/131801284-cacd5ded-1577-41a6-b66e-eb0b7b157afa.png">

Files

callahantiff/PheKnowLator-v2.1.1.zip

Files (64.1 MB)

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Additional details