Prediction of horizontal gene transfer using graph neural network

Prediction of horizontal gene transfer (HGT) using graph neural network

This pipeline performs data splitting on precomputed HGT data and trains a graph neural network model.

Acknowledgment

1. T. N. Kipf, M. Welling, Variational Graph Auto-Encoders, NIPS Workshop on Bayesian Deep Learning (2016)
2. SNAP: Stanford Network Analysis Project
3. TensorFlow (1.13.1)
4. python (3.5.5)
5. networkx
6. scikit-learn
7. scipy
8. pandas
9. numpy
10. tqdm