Biodiversity Literature Repository

Submit to community
Liberated Data
Published October 15, 2018 | Version v1
Journal article Restricted

Bearing the wrong identity: A case study of an Indo-Pacific common shallow water sponge of the genus Neopetrosia (Haplosclerida; Petrosiidae)

Authors/Creators

  • 1. Department of Earth and Environmental Science, Paleontology & Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany.
  • 2. Department of Earth and Environmental Science, Paleontology & Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany. & GeoBio-Center, Ludwig-Maximilians-Universität München, Munich, Germany
  • 3. Department of Earth and Environmental Science, Paleontology & Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany. & GeoBio-Center, Ludwig-Maximilians-Universität München, Munich, Germany & SNSB-Bayerische Staatssammlung für Paläontologie und Geologie
  • 4. Marine Biodiversity, Naturalis Biodiversity Center, Leiden the Netherlands & Institute of Environmental Sciences, Leiden University, Leiden, the Netherlands

Description

Setiawan, Edwin, Erpenbeck, Dirk, Wörheide, Gert, De Voogd, Nicole J. (2018): Bearing the wrong identity: A case study of an Indo-Pacific common shallow water sponge of the genus Neopetrosia (Haplosclerida; Petrosiidae). Zootaxa 4500 (1): 43-58, DOI: 10.11646/zootaxa.4500.1.2

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Cites
Publication: 10.1016/j.jopr.2013.07.001 (DOI)
Publication: 10.1016/j.jopr.2013.08.001 (DOI)
Publication: 10.1109/TAC.1974.1100705 (DOI)
Publication: 10.14203/mri.v28i0.411 (DOI)
Publication: 10.1016/j.ympev.2004.02.021 (DOI)
Publication: 10.1016/B978-0-12-387787-1.00010-6 (DOI)
Publication: 10.1080/106351598260761 (DOI)
Publication: 10.1038/nmeth.2109 (DOI)
Publication: 10.1021/ol800898z (DOI)
Publication: 10.5962/bhl.title.6516 (DOI)
Publication: 10.1111/j.1439-0485.2008.00238.x (DOI)
Publication: 10.1093/nar/gkh340 (DOI)
Publication: 10.1111/j.1755-0998.2009.02732.x (DOI)
Publication: 10.1093/molbev/msp259 (DOI)
Publication: 10.3390/md204154 (DOI)
Publication: 10.1038/44560 (DOI)
Publication: 10.1186/s12983-015-0099-8 (DOI)
Publication: 10.1021/np0202226 (DOI)
Publication: 10.1007/BF02772108 (DOI)
Publication: 10.1093/icb/ict078 (DOI)
Publication: 10.1371/journal.pone.0024344 (DOI)
Publication: 10.1093/sysbio/sys029 (DOI)
Publication: 10.1017/S0025315410002122 (DOI)
Publication: 10.1007/s13127-011-0056-0 (DOI)
Publication: 10.1080/10635150802429642 (DOI)
Publication: 10.1017/S0025315400004562 (DOI)
Publication: 10.1093/icb/ict071 (DOI)
Publication: 10.1002/jemt.10395 (DOI)
Publication: 10.1016/0077-7579(89)90016-1 (DOI)
Publication: 10.1371/journal.pone.0039345 (DOI)
Publication: 10.1002/iroh.19790640411 (DOI)
Has part
Taxonomic treatment: http://treatment.plazi.org/id/03CE87C3FF917A61FF5DBF3C8ACBFD69 (URL)
Taxonomic treatment: http://treatment.plazi.org/id/03CE87C3FF917A61FF5DBE0F8D83FA6D (URL)
Taxonomic treatment: http://treatment.plazi.org/id/03CE87C3FF917A66FF5DBB0B8F55FE87 (URL)
Taxonomic treatment: http://treatment.plazi.org/id/03CE87C3FF967A67FF5DBB978B78FE37 (URL)
Taxonomic treatment: 10.5281/zenodo.5300193 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/03CE87C3FF977A64FF5DB8878FA9FF4F (URL)
Figure: 10.5281/zenodo.5363019 (DOI)
Figure: 10.5281/zenodo.5363021 (DOI)
Figure: 10.5281/zenodo.5363023 (DOI)
Figure: 10.5281/zenodo.5363025 (DOI)
Figure: 10.5281/zenodo.5363027 (DOI)
Figure: 10.5281/zenodo.5363029 (DOI)

References

  • Abdillah, S., Nurhayati, A.P.D., Nurhatika, S., Setiawan, E. & Heffen, W.L. (2013a) Cytotoxic and antioxidant activities of marine sponge diversity at Pecaron Bay Pasir Putih Situbondo East Java, Indonesia. Journal of Pharmacy Research, 6, 685-689. https://doi.org/10.1016/j.jopr.2013.07.001
  • Abdillah, S., Wahida-Ahmad, R., Kamal-Muzaki, F. & Mohd-Noor, N. (2013b) Antimalarial activity of Neopetrosia exigua extract in mice. Journal of Pharmacy Research, 6, 799-803. https://doi.org/10.1016/j.jopr.2013.08.001
  • Akaike, H. (1974) A new look at the statistical model identification. Automatic Control, IEEE Transactions on, 19, 716-723. https://doi.org/10.1109/TAC.1974.1100705
  • Amir, I. (1992) A comparison of sponge fauna of exposed and sheltered reef flats in eastern Indonesia. Marine Resources in Indonesia, 28, 1-12. https://doi.org/10.14203/mri.v28i0.411
  • Bavestrello, G., Bonito, M. & Sara, M. (1993) Influence of depth on the size of sponge spicules. Scientia Marina, 57 (4), 415- 420.
  • Bergquist, P.R. (1965) The sponges of Micronesia, Part I. The Palau archipelago. Pacific Science, 19, 123-204. https://doi.org/10125/4411
  • Borchiellini, C., Chombard, C., Manuel, M., Alivon, E., Vacelet, J. & Boury-Esnault, N. (2004) Molecular phylogeny of Demospongiae: implications for classification and scenarios of character evolution. Molecular Phylogenetics and Evolution, 32, 823-837. https://doi.org/10.1016/j.ympev.2004.02.021
  • Cardenas, P., Perez, T. & Boury-Esnault, N. (2012) Sponge systematics facing new challenges. In: Becerro, M.A., Uriz, M.J., Maldonado, M. & Turon, X. (Eds.), Advances in Marine Biology. Academic Press, London, pp. 79-209. https://doi.org/10.1016/B978-0-12-387787-1.00010-6
  • Chombard, C., Boury-Esnault, N. & Tillier, A. (1998) Reassessment of homology of morphological characters in tetractinellid sponges based on molecular data. Systematic Biology, 47, 351-366. https://doi.org/10.1080/106351598260761
  • Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9, 772-772. https://doi.org/10.1038/nmeth.2109
  • de Almeida Leone, P., Carroll, A.R., Towerzey, L., King, G., McArdle, B.M., Kern, G., Fisher, S., Hooper, J.N.A. & Quinn, R.J. (2008) Exiguaquinol: a novel pentacyclic hydroquinone from Neopetrosia exigua that inhibits Helicobacter pylori MurI. Organic Letters, 10, 2585-2588. https://doi.org/10.1021/ol800898z
  • De Laubenfels, M.W. (1954) The Sponges of the West-Central Pacific. In: Oregon State Monographs, Studies Zoology. Oregon State College, Corvallis, pp. 1-306. https://doi.org/10.5962/bhl.title.6516
  • de Voogd, N.J. (2004) Callyspongia (Euplacella) biru spec.nov. (Porifera: Demospongiae: Haplosclerida) from Indonesia. Zoologische Mededelingen Leiden, 78, 477-483.
  • de Voogd, N.J., Becking, L.E., Hoeksema, B., Noor, A. & Van Soest, R.W.M. (2004) Sponge interactions with spatial competitors in the spermonde archipelago. Bollettino Museo Istituti Universita Genova, 68, 253-261.
  • de Voogd, N.J. & Cleary, D.F.R. (2008) An analysis of sponge diversity and distribution at three taxonomic levels in the Thousand islands/Jakarta bay reef complex, West-Java, Indonesia. Marine Ecology, 29, 205-215. https://doi.org/10.1111/j.1439-0485.2008.00238.x
  • de Voogd, N.J. & van Soest, R.W.M. (2002) Indonesian sponges of the genus Petrosia Vosmaer (Demospongiae: Haplosclerida). Zoologische Mededelingen, 76, 1-16.
  • de Weerdt, W.H. (1985) A systematic revision of the north-eastern Atlantic shallow-water Haplosclerida (Porifera, Demospongiae), Part I: Introduction Oceanapiidae and Petrosiidae. Beaufortia, 35, 61-91.
  • de Weerdt, W.H. & van Soest, R.W.M. (2001) Haliclona (Halichoclona) vanderlandi spec. nov (Porifera: Demospongiae: Haplosclerida) from Indonesia. Zoologische Verhandelingen Leiden, 334, 189-194.
  • Desqueyroux-Faundez, R. & Valentine, C. (2002) Family Petrosiidae Van Soest, 1980. In: Hooper, J.N.A & van Soest, R.W.M (Eds.), Systema Porifera: a guide to the classification of sponges. Kluwer Academic/Plenum Publishers, New York, pp. 906-917.
  • Drummond, A.J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Duran, C., Field, M., Heled, J., Kearse, M., Markowitz, S., Moir, R., Stones-Havas, S., Sturrock, S., Thierer, T. & Wilson, A. (2014) Geneious. Version 6.1.7 created by Biomatters. Available from: http://geneious.com (accessed 1 April 2014)
  • Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792-1797. https://doi.org/10.1093/nar/gkh340
  • Flot, J.F. (2010) Seqphase: a web tool for interconverting phase input/output files and fasta sequence alignments. Molecular Ecology Resources, 10, 162-166. https://doi.org/10.1111/j.1755-0998.2009.02732.x
  • Gouy, M., Guindon, S. & Gascuel, O. (2010) SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building. Molecular Biology and Evolution, 27, 221-224. https://doi.org/10.1093/molbev/msp259
  • Hooper, J.N.A. & van Soest, R.W.M. (2002) Systema Porifera: a guide to the classification of sponges: Kluwer Academic/ Plenum Publishers, New York, 1101 pp.
  • International Code of Zoological Nomenclature (ICZN) (2015) Available from: http://www.iczn.org/iczn/index.jsp (accessed 12 April 2014)
  • Kelly-Borges, M. & Bergquist, P.R. (1988) Sponges from Motupore Island, Papua New Guinea. Indo-Malayan Zoology, 5, 121-159.
  • Kirkpatrick, R. (1900) On the sponges of Christmas Island. Proceedings of the Zoological Society of London, 1900, 127-141, pls. XII-XIII.
  • Liu, H., Mishima, Y., Fujiwara, T., Nagai, H., Kitazawa, A., Mine, Y., Kobayashi, H., Yao, X., Yamada, J., Oda, T. & Namikoshi, M. (2004) Isolation of araguspongine M, a new stereoisomer of an araguspongine/xestospongin alkaloid, and dopamine from the marine sponge Neopetrosia exigua collected in Palau. Marine Drugs, 2, 154-163. https://doi.org/10.3390/md204154
  • Maldonado, M., Carmona, M.C., Uriz, M.J. & Cruzado, A. (1999) Decline in mesozoic reef-building sponges explained by silicon limitation. Nature, 401, 785-788. https://doi.org/10.1038/44560
  • Morrow, C. & Cardenas, P. (2015) Proposal for a revised classification of the Demospongiae (Porifera). Frontiers in Zoology, 12 (7). [published online] https://doi.org/10.1186/s12983-015-0099-8
  • Orabi, K.Y., El-Sayed, K.A., Hamann, M.T., Dunbar, D.C., Al-Said, M.S., Higa, T. & Kelly, M. (2002) Araguspongines K and L, new bioactive Bis-1-oxaquinolizidine N-oxide alkaloids from Red Sea specimens of Xestospongia exigua. Journal of Natural Products, 65, 1782-1785. https://doi.org/10.1021/np0202226
  • Porebski, S., Bailey, L.G. & Baum, B. (1997) Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Molecular Biology Reporter, 15, 8-15. https://doi.org/10.1007/BF02772108
  • Redmond, N.E., Morrow, C., Thacker, R.W., Diaz, M.C., Boury-Esnault, N., Cardenas, P., Hadju, E., Lobo-Hadju, G., Picton, B.E., Pomponi, S.A., Kayal, E. & Collins, A.G. (2013) Phylogeny and systematics of Demospongiae in light of new small- subunit ribosomal DNA (18S) sequences. Integrative and Comparative Biology, 53, 388-415. https://doi.org/10.1093/icb/ict078
  • Redmond, N.E., Raleigh, J., van Soest, R.W.M., Kelly, M., Travers, S.A.A., Bradshaw, B., Vartia, S., Stephens, K.M. & McCormack, G.P. (2011) Phylogenetic relationships of the marine Haplosclerida (Phylum Porifera) employing ribosomal (28S rRNA) and mitochondrial (cox1, nad1) gene sequence data. PLoS One, 6, e24344. https://doi.org/10.1371/journal.pone.0024344
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61, 539-542. https://doi.org/10.1093/sysbio/sys029
  • Rua, C.P.J., Zilberberg, C. & Sole-Cava, A.M. (2011) New polymorphic mitochondrial markers for sponge phylogeography. Journal of the Marine Biological Association of the United Kingdom, 91, 1015-1022. https://doi.org/10.1017/S0025315410002122
  • Silvestro, D. & Michalak, I. (2012) RaxmlGUI: a graphical front-end for RAxML. Organisms Diversity & Evolution, 12, 335- 337. https://doi.org/10.1007/s13127-011-0056-0
  • Stamatakis, A. (2008) The RAxML 7.0.4 manual. Department of Computer Science. Ludwig-Maximilians-Universitat Munchen. Available from: http://web.natur.cuni.cz/~vlada/moltax/RAxML-Manual.7.0.4.pdf (accessed 1 April 2014)
  • Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology, 57, 758-771. https://doi.org/10.1080/10635150802429642
  • Stone, A.R. (1970) Seasonal variations of spicule size in Hymeniacidon perleve. Journal of the Marine Biological Association of the United Kingdom, 50, 343-348. https://doi.org/10.1017/S0025315400004562
  • Thacker, R.W., Hill, A.L., Hill, M.S., Redmond, N.E., Collins, A.G., Morrow, C., Spicer, L., Carmack, C.A., Zappe, M.E., Pohlman, D., Hall, C., Diaz, M.C. & Bangalore, P.V. (2013) Nearly complete 28S rRNA gene sequences confirm new hypotheses of sponge evolution. Integrative and Comparative Biology, 53, 373-387. https://doi.org/10.1093/icb/ict071
  • Thiele, J. (1899) Studien uber Pazifische spongien. II. Ueber einige spongien von Celebes. Zoologica. Original-Abhandlungen aus dem Gesamtgebiete der Zoologie, Stuttgart, 24 (2), 1-33, pls. I-V.
  • Uriz, M.J., Turon, X., Becerro, M.A. & Agell, G. (2003) Siliceous spicules and skeleton frameworks in sponges: Origin, diversity, ultrastructural patterns, and biological functions. Microscopy Research and Technique, 62, 279-299. https://doi.org/10.1002/jemt.10395
  • van Soest, R.W.M. (1980) Marine sponges from Curacao and other Caribbean localities. Part II. Haplosclerida. In: Hummelinck, P.W. & Van der Steen, L.J. (Eds.), Uitgaven van de Natuurwetenschappelijke Studiekring voor Suriname ende Nederlandse Antillen. No. 104. Studies on the Fauna of Curacao and other Caribbean Islands, 62 (191), pp. 1-173. Avaliable from: http://www.repository.naturalis.nl/document/550028 (accessed 11 January 2016)
  • van Soest, R.W.M. (1989) The Indonesian sponge fauna: A status report. Netherlands Journal of Sea Research, 23, 223-230. https://doi.org/10.1016/0077-7579(89)90016-1
  • van Soest, R.W.M., Boury-Esnault, N., Hooper, J.N.A., Rutzler, K., de Voogd, N.J., Alvarez, B., Hajdu, E., Pisera, A.B., Manconi, R., Schonberg, C., Klautau, M., Picton, B., Kelly, M., Vacelet, J., Dohrmann, M., Diaz, M.C., Cardenas, P., Carballo, J.L., Rios, P. & Downey, R. (2017) World Porifera database. Available from: http://www.marinespecies.org/ porifera/porifera.php?p=taxdetails&id=194570 (accessed 12 April 2017)
  • van Soest, R.W.M. & Hooper, J.N.A. (2002) Order Haplosclerida Topsent 1928. In: Hooper, J.N.A. & Van Soest, R.M.W. (Eds.), Systema Porifera: a guide to the classification of sponges. Kluwer Academic/Plenum Publishers, New York, pp. 831-832.
  • van Soest, R.W.M. & Hooper, J.N.A. (2002) Suborder Haplosclerina Topsent 1928. In: Hooper, J.N.A. & Van Soest, R.M.W. (Eds.), Systema Porifera: a guide to the classification of sponges. Kluwer Academic/ Plenum Publishers, New York, pp. 833-834.
  • van Soest, R.W.M. & Hooper, J.N.A. (2002) Suborder Petrosina-Boury Esnault and van Beveren, 1982. In: Hooper, J.N.A. & Van Soest, R.M.W. (Eds.), Systema Porifera: Guide to the classification of sponges. Kluwer Academic/ Plenum Publishers, New York, pp. 891-892.
  • Vargas, S., Schuster, A., Sacher, K., Buttner, G., Schatzle, S., Lauchli, B., Hall, K., Hooper, J.N.A., Erpenbeck, D. & Woerheide, G. (2012) Barcoding sponges: an overview based on comprehensive sampling. PLoS One, 7, e39345. https://doi.org/10.1371/journal.pone.0039345
  • Wiedenmayer, F. (1977) Shallow-water sponges of the western Bahamas, Birkhauser Verlag, Basel, 287 pp. https://doi.org/10.1002/iroh.19790640411
  • Zea, S. & van Soest, R.W.M. (1986) Three new species of sponges from the Colombian Caribbean. Bulletin of Marine Science, 38 (2), 355-365.