Published January 2, 2024 | Version v2
Dataset Open

Additional information for Acidification from microbial oxidation of N, S, Fe and Mn as potential key mechanism for sprayed concrete deterioration in a subsea road tunnel

Authors/Creators

  • 1. Department of Architecture and Civil Engineering, Chalmers University of Technology, Göteborg, Göteborg, Sweden
  • 2. Division of Water Resources Engineering, Faculty of Engineering LTH, Lund University, Lund, Sweden
  • 3. Tunnel and Concrete Division, The Norwegian Public Roads Administration, Oslo, Norway

Description

Here we include additional files for Karacic et al. Acidification from microbial oxidation of N, S, Fe and Mn as potential key mechanism for sprayed concrete deterioration in a subsea road tunnel

Metagenome reads and MAGs are avaliable in the NCBI BioProject PRJNA755678

The following files are included here

  • MAGs_summary_Oslofjord.tsv: Information about the Oslofjord MAGs (GTDB R207 taxonomy, relative abundance, Completness, Contamination, NCBI accessions)
  • gtdbtk.ar53.summary. Output from GTDB-Tk v2.1.0 with GTDB R207_v2. Archaeal MAGs
  • gtdbtk.bac120.summary.tsv. Output from GTDB-Tk v2.1.0 with GTDB R207_v2. Bacterial MAGs
  • FeGenie-geneSummary.csv: Output from FeGenie
  • Annotations_1.tsv : Output from DRAM (215 MAGs)
  • Annotations_2.tsv: Output from DRAM (186 MAGs)
  • OFTMs_DRAM_genes.DiSCo.filtered.txt. Output from DiSCo
  • code_R.zip: R-code and additional files used for making MAGs figures

This is version 2 of the dataset and it replaces version 1 (https://doi.org/10.5281/zenodo.5292093) 

Files

code_R.zip

Files (429.1 MB)

Name Size
md5:b9ce8b51bd10fbb3bc59910d7ee5f1d1
235.0 MB Download
md5:6b63b9b9f0f84f991324f4387a5bce1c
187.9 MB Download
md5:2f0b58f195e750ae9e775e4e8aced4d7
783.2 kB Preview Download
md5:52b47bad7dddd1b9240fc719e7cf1d23
4.9 MB Preview Download
md5:fc74a318e2c3115493b46cc20a8f4fd3
13.5 kB Download
md5:3e5824b81b415a6585e2b0283937dcea
255.5 kB Download
md5:333390f4131c611134fc985f3774784b
86.2 kB Download
md5:f209872881c9c8919321dadea2b7cf90
138.9 kB Preview Download