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Published April 18, 2013 | Version v1
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Non-invasive ancient DNA protocol for fluid-preserved specimens and phylogenetic systematics of the genus Orestias (Teleostei: Cyprinodontidae)

Authors/Creators

  • 1. UMR BOREA, Département Milieux et Peuplements Aquatiques MNHN - CNRS 7208 - IRD 207 - UPMC, Muséum National d'Histoire Naturelle, 43 rue Cuvier, 75231 Paris, France
  • 2. UMR BOREA, Département Milieux et Peuplements Aquatiques MNHN - CNRS 7208 - IRD 207 - UPMC, Muséum National d'Histoire Naturelle, 43 rue Cuvier, 75231 Paris, France & Current address: Charter School of the Dunes, 860 N Lake Street, Gary, IN 46403, USA
  • 3. UMR BOREA, Département Milieux et Peuplements Aquatiques MNHN - CNRS 7208 - IRD 207 - UPMC, Muséum National d'Histoire Naturelle, 43 rue Cuvier, 75231 Paris, France & Instituto de Ecología - Unidad de Limnología, Universidad Mayor de San Andrés, Campus Universitario Cota cota C.27 s/n, La Paz, Bolivia
  • 4. UMS Outils et méthodes de la systématique intégrative CNRS 2700, Département Systématique & Evolution, Muséum national d'Histoire naturelle, 57 rue Cuvier, 75005 Paris, France
  • 5. Genoscope. Centre National de Sequençage, 2 rue Gaston Crémieux, CP5706, 91057 Evry Cedex, France

Description

Garrigos, Yareli Esquer, Hugueny, Bernard, Koerner, Kellie, Ibañez, Carla, Bonillo, Celine, Pruvost, Patrice, Causse, Romain, Cruaud, Corinne, Gaubert, Philippe (2013): Non-invasive ancient DNA protocol for fluid-preserved specimens and phylogenetic systematics of the genus Orestias (Teleostei: Cyprinodontidae). Zootaxa 3640 (3): 373-394, DOI: 10.11646/zootaxa.3640.3.3

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Publication: 10.1111/j.1558-5646.2011.01417.x (DOI)
Publication: 10.1002/ajpa.21647 (DOI)
Publication: 10.1016/S1055-7903(02)00371-8 (DOI)
Publication: 10.1111/j.1095-8649.2011.02975.x (DOI)
Publication: 10.1016/S1055-7903(02)00369-X (DOI)
Publication: 10.1007/978-1-61779-516-9_4 (DOI)
Publication: 10.1016/0006-291X(85)90390-0 (DOI)
Publication: 10.1016/j.tim.2005.03.010 (DOI)
Publication: 10.2307/3283665 (DOI)
Publication: 10.1098/rspb.2006.3558 (DOI)
Publication: 10.1007/978-1-61779-516-9_13 (DOI)
Publication: 10.1016/0006-291X(87)91472-0 (DOI)
Publication: 10.1080/02724634.1999.10011118 (DOI)
Publication: 10.1016/0304-4149(82)90011-4 (DOI)
Publication: 10.1016/S0344-0338(11)80118-4 (DOI)
Publication: 10.1007/978-94-011-2406-5_10 (DOI)
Publication: 10.1016/S1055-7903(03)00077-0 (DOI)
Publication: 10.1111/j.1095-8649.2008.02140.x (DOI)
Publication: 10.1038/347550a0 (DOI)
Publication: 10.2307/3278273 (DOI)
Publication: 10.1007/978-3-0348-8125-8_12 (DOI)
Publication: 10.1146/annurev.genet.37.110801.143214 (DOI)
Publication: 10.2307/1446795 (DOI)
Publication: 10.1007/PL00006204 (DOI)
Publication: 10.1093/molbev/msn083 (DOI)
Publication: 10.1111/j.1365-294X.2009.04092.x (DOI)
Publication: 10.2144/000112383 (DOI)
Publication: 10.1111/j.1471-8286.2007.01905.x (DOI)
Publication: 10.1078/1439-6092-00071 (DOI)
Publication: 10.1080/10635150701772563 (DOI)
Publication: 10.1017/S1477200005001891 (DOI)
Publication: 10.1111/j.1096-3642.1944.tb00218.x (DOI)
Publication: 10.1016/j.foodcont.2009.04.012 (DOI)
Publication: 10.1643/0045-8511(2006)2006[472:ANSOKI]2.0.CO;2 (DOI)
Publication: 10.1080/14634980701351395 (DOI)
Publication: 10.1016/j.tree.2007.08.017 (DOI)
Publication: 10.1046/j.1365-294X.1997.00271.x (DOI)
Publication: 10.1023/B:COGE.0000014061.04963.da (DOI)
Publication: 10.1002/(SICI)1096-8644(199804)105:4<539::AID-AJPA10>3.0.CO;2-1 (DOI)
Publication: 10.1016/j.jas.2004.09.008 (DOI)
Publication: 10.1007/s10126-001-0010-9 (DOI)
Publication: 10.1111/j.1755-0998.2010.2838.x (DOI)
Has part
Figure: 10.5281/zenodo.5262743 (DOI)
Figure: 10.5281/zenodo.5263545 (DOI)
Figure: 10.5281/zenodo.5263547 (DOI)
Figure: 10.5281/zenodo.5263551 (DOI)
Figure: 10.5281/zenodo.5263553 (DOI)

References

  • Arratia, G. (1982) Peces del Altiplano de Chile. In: Veloso, A. & Bustos, E. (Eds.) El Hombre y los Ecosistemas de Montana. Vol. 1. Oficina Regional de Ciencia y Tecnologia de la UNESCO para America Latina y el Caribe, Montevideo, Uruguay, pp. 93-133.
  • Avise, J.C. (2000) Phylogeography: the history and formation of species. Harvard University Press, Cambridge, MA, 447 pp.
  • Azpiazu, W.I. (2002) Hibridacion artificial entre carachi (Orestias agassii) y punku (Orestias luteus) "killifish" del Lago Titicaca. Tesis de Licenciatura, Facultad de Agronomia, Universidad Mayor de San Andres, La Paz, Bolivia, 62 pp.
  • Bezault, E., Mwaiko, S. & Seehausen, O. (2011) Population genomic tests of models of adaptive radiation in Lake Victoria region cichlid fish. Evolution, 65, 3381-3397. http://dx.doi.org/10.1111/j.1558-5646.2011.01417.x
  • Bolnick, D.A., Bonine, H.M., Mata-Miguez, J., Kemp, B.M., Snow, M.H. & LeBlanc, S.A. (2012) Nondestructive sampling of human skeletal remains yields ancient nuclear and mitochondrial DNA. American Journal of Physical Anthropology, 147, 293-300. http://dx.doi.org/10.1002/ajpa.21647
  • Castelnau, F. (1855) Expedition dans les parties centrales de l'Amerique du Sud, de Rio de Janeiro a Lima, et de Lima au Para. II. Poissons. Paris, 112 pp.
  • Chakraborty, A., Sakai, M. & Iwatsuki, Y. (2006) Museum fish specimens and molecular taxonomy: a comparative study on DNA extraction protocols and preservation techniques. Journal of Applied Ichthyology, 22, 160-166.
  • Chase, M.R., Etter, R.J., Rex, M.A. & Quattro, J.M. (1998) Extraction and amplification of mitochondrial DNA from formalinfixed deep-sea molluscs. BioTechniques, 24, 243-247.
  • Chen, W., Bonillo, C. & Lecointre, G. (2003) Repeatability of clades as a criterion of reliability: a case study for molecular phylogeny of Acanthomorpha (Teleostei) with larger number of taxa. Molecular Phylogenetics and Evolution, 26, 262- 288. http://dx.doi.org/10.1016/S1055-7903(02)00371-8
  • Cope, E.D. (1876) Note on the ichthyology of Lake Titicaca. Journal of the Academy of Natural Sciences of Philadelphia, 8, 185-187.
  • Cuvier, G. & Valenciennes, A. (1846) Histoire Naturelle des Poissons. Tome 18, Paris, 505 pp.
  • De Bruyn, M., Parenti, L.R. & Carvalho, G.R. (2011) Successful extraction of DNA from archived alcohol-fixed white-eye fish specimens using an ancient DNA protocol. Journal of Fish Biology, 78, 2074-2079. http://dx.doi.org/10.1111/j.1095-8649.2011.02975.x
  • Drummond, A.J. & Rambaut, A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
  • Eigenmann, C.H. & Allen, W.R. (1942) Fishes of western South America. I. The Intercordilleran and Amazonian lowlands of Peru. II. The high pampas of Peru, Bolivia, and northern Chile. With a revision of the Peruvian Gymnotidae, and of the genus Orestias. University of Kentucky, 494 pp.
  • Eschmeyer, W.N. & Fong, J.D. (2010) Species by Family/Subfamily. Online catalogue of fishes. Available from http:// researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp (accessed 25 August 2012)
  • Falk, T.M., Teugels, G.G., Abban, E.K., Villwock, W. & Renwrantz, L. (2003) Phylogeographic patterns in populations of the black-chinned tilapia complex (Teleostei, Cichlidae) from coastal areas in West Africa: support for the refuge zone theory. Molecular Phylogenetics and Evolution, 27, 81-92. http://dx.doi.org/10.1016/S1055-7903(02)00369-X
  • Fulton, T.L., Wagner, S.M. & Shapiro, B. (2012) Case study: recovery of ancient nuclear DNA from toe pads of the extinct passenger pigeon. In: Shapiro, B. & Hofreiter, M. (Eds.) Ancient DNA: Methods and protocols. Humana Press, California, pp. 29-35. http://dx.doi.org/10.1007/978-1-61779-516-9_4
  • Garman, S.W. (1895) The cyprinodonts. Memoirs of the Museum of Comparative Zoology, Cambridge, 19, pp. 1-179.
  • Goelz, S.E., Hamilton, S.R. & Vogelstein, B. (1985) Purification of DNA from formaldehyde fixed and paraffin embedded human tissue. Biochemical and Biophysical Research Communications, 130, 118-126. http://dx.doi.org/10.1016/0006-291X(85)90390-0
  • Hall, T. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
  • Harrison, I.J. & Stiassny, M.L.J. (2004) CREO List of Fish Extinctions since AD 1500. American Museum of Natural History, Commitee on Recently Extinct Organism. Available from http://creo.amnh.org/ (accessed 25 August 2012).
  • Hebsgaard, M.B., Phillips, M.J. & Willerslev, E. (2005) Geologically ancient DNA: fact or artefact? Trends in Microbiology, 13, 212-220. http://dx.doi.org/10.1016/j.tim.2005.03.010
  • Heckmann, R.A. (1992) Host records and tissue locations for Diplostomum mordax (Metacercariae) inhabiting the cranial cavity of fishes from Lake Titicaca, Peru. Journal of Parasitology, 78, 541-543. http://dx.doi.org/10.2307/3283665
  • Herder, F., Nolte, A.W., Pfaender, J., Schwarzer, J., Hadiaty, R.K. & Schliewen, U.K. (2006) Adaptive radiation and hybridization in Wallace's Dreamponds: evidence from sailfin silversides in the Malili Lakes of Sulawesi. Proceedings of the Royal Society B: Biological Sciences, 273, 2209-2217. http://dx.doi.org/10.1098/rspb.2006.3558
  • Hofreiter, M. (2012) Nondestructive DNA extraction from museum specimens In: Shapiro, B. & Hofreiter, M. (Eds.) Ancient DNA: methods and protocols. Humana Press, California, pp. 93-100. http://dx.doi.org/10.1007/978-1-61779-516-9_13
  • Impraim, C.C., Saiki, R.K., Erlich, H.A. & Teplitz, R.L. (1987) Analysis of DNA extracted from formalin-fixed, paraffinembedded tissues by enzymatic amplification and hybridization with sequence-specific oligonucleotides. Biochemical and Biophysical Research Communications, 142, 710-716. http://dx.doi.org/10.1016/0006-291X(87)91472-0
  • Kelman, L.M. & Kelman, Z. (1999) The use of ancient DNA in paleontological studies. Journal of Vertebrate Paleontology, 19, 8-20. http://dx.doi.org/10.1080/02724634.1999.10011118
  • Kingman, J.F.C. (1982) The coalescent. Stochastic Processes and their Applications, 13, 235-248. http://dx.doi.org/10.1016/0304-4149(82)90011-4
  • Koshiba, M., Ogawa, K., Hamazaki, S., Sugiyama, T. & Ogawa, O. (1993) The effect of formalin fixation on DNA and the extraction of high-molecular-weight DNA from fixed and embedded tissues. Pathology Research and Practice, 189, 66- 72. http://dx.doi.org/10.1016/S0344-0338(11)80118-4
  • Kosswig, C. & Villwock, W. (1964) Das problem der intralakustrischen speziation im Titicaca und Lanaosee. Verhandlungen der Deutschen Zoologischen Gesellschaft, 28, 95-102.
  • Lauzanne, L. (1981) Description de trois Orestias nouveaux de lac Titicaca, O. ispi n. sp., O. forgeti n. sp. et. O. tchernavini n. sp. (Pisces, Cyprinodontidae). Cybium, 5, 71-91.
  • Lauzanne, L. (1982) Les Orestias (Pisces, Cyprinodontidae) du Petit lac Titicaca. Revue d'Hydrobiologie Tropicale, 15, 39-70.
  • Lauzanne, L. (1992) Fish fauna. Native species. The Orestias. In: Dejoux, C. & Iltis, A. (Eds.) Lake Titicaca: a synthesis of limnological knowledge, Kluwer Academic, London, pp. 405-419. http://dx.doi.org/10.1007/978-94-011-2406-5_10
  • Loubens, G. (1989) Observations sur les poissons de la partie Bolivienne du lac Titicaca. IV. Orestias spp., Salmo gairdneri et problemes d'amenagement. Revue d'Hydrobiologie Tropicale, 22, 157-177.
  • Luo, A., Qiao, H., Zhang, Y., Shi, W., Ho, S., Xu, W., Zhang, A. & Zhu, C. (2010) Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets. BMC Evolutionary Biology, 10, 242.
  • Lussen, A., Falk, T. & Villwock, W. (2003) Phylogenetic patterns in populations of Chilean species of the genus Orestias (Teleostei: Cyprinodontidae): Results of mitochondrial DNA analysis. Molecular Phylogenetics and Evolution, 29, 151- 160. http://dx.doi.org/10.1016/S1055-7903(03)00077-0
  • Maldonado, E., Hubert, N., Sagnes, P. & De Merona, B. (2009) Morphology-diet relationships in four killifishes (Teleostei, Cyprinodontidae, Orestias) from Lake Titicaca. Journal of Fish Biology, 74, 502-520. http://dx.doi.org/10.1111/j.1095-8649.2008.02140.x
  • Meyer, A., Kocher, T.D., Basasibwaki, P. & Wilson, A.C. (1990) Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences. Nature, 347, 550-553. http://dx.doi.org/10.1038/347550a0
  • Moran, P. & Kornfield, I. (1993) Retention of an ancestral polymorphims in the Mbuna species flock (Teleostei:Cichlidae) of lake Malawi. Molecular Biology and Evolution, 10, 1015-1029.
  • Mueller, J.F. (1972) Cranial deformation in a fish resulting from intracranial parasitism by strigeid metacercariae. Journal of Parasitology, 58, 183-184. http://dx.doi.org/10.2307/3278273
  • Muller, R. (1993) Critical remarks on the revision of the genus Orestias (Pisces Cyprinodontidae) by Parenti (1984). Zoologische Jahrbucher. Abteilung fur Anatomie und Ontogenie der Tiere, 123, 31-58.
  • Nishiguchi, M.K., Doukakis, P.E., Egan, M., Kizirian, D., Phillips, A., Prendini, L., Rosenbaum, H.C., Torres, E., Wyner, Y., DeSalle, R. & Giribet, G. (2002) DNA isolation protocols. In: DeSalle, R., Wheeler, W. & Giribet, G. (Eds.) Techniques in molecular systematics and evolution. Birkhauser, Germany, pp. 250-287. http://dx.doi.org/10.1007/978-3-0348-8125-8_12
  • Paabo, S., Higuchi, R.G. & Wilson, A.C. (1989) Ancient DNA and the polymerase chain reaction. The emerging field of molecular archaeology. Journal of Biological Chemistry, 264, 9709-9712.
  • Paabo, S., Poinar, H., Serre, D., Jaenicke-Despres, V., Hebler, J., Rohland, N., Kuch, M., Krause, J., Vigilant, L. & Hofreiter, M. (2004) Genetic analysis from ancient DNA. Annual Review of Genetics, 38, 645-679. http://dx.doi.org/10.1146/annurev.genet.37.110801.143214
  • Parenti, L.R. (1981) A phylogenetic and biogeographic analysis of cyprinodontiform fishes (Teleostei, Atherinomorpha). Bulletin of the American Museum of Natural History, 168, 335-557.
  • Parenti, L.R. (1984a) A taxonomic revision of the Andean killifish genus Orestias (Cyprinodontiformes, Cyprinodontidae). Bulletin of the American Museum of Natural History, 178, 107-214.
  • Parenti, L.R. (1984b) Biogeography of the Andean killifish genus Orestias with comments on the species flock concept. In: Echelle, A.A. & Kornfield, I. (Eds.) Evolution of fish species flocks. University of Maine at Orono Press, pp. 85-92.
  • Parker, A. & Kornfield, I. (1995) Molecular perspective on evolution and zoogeography of cyprinodontid killifishes (Teleostei; Atherinomorpha). Copeia, 1995, 8-21. http://dx.doi.org/10.2307/1446795
  • Parker, A. & Kornfield, I. (1997) Evolution of the mitochondrial DNA control region in the mbuna (Cichlidae) species flock of lake Malawi, East Africa. Journal of Molecular Evolution, 45, 70-83. http://dx.doi.org/10.1007/PL00006204
  • Posada, D. (2008) jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253-1256. http://dx.doi.org/10.1093/molbev/msn083
  • Raja, M., Muralidharan, M. & Arunachalam, M. (2011) Comparative analysis of DNA extracted from fish species preserved in formalin in two different periods. Turkish Journal of Biology, 35, 331-336.
  • Ramakrishnan, U.M.A. & Hadly, E.A. (2009) Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Molecular Ecology, 18, 1310-1330. http://dx.doi.org/10.1111/j.1365-294X.2009.04092.x
  • Rambaut, A. (2009) FigTree. Version 1.3.1. Available from http://tree.bio.ed.ac.uk/software/figtree (accessed May 2012).
  • Rambaut, A. & Drummond, A.J. (2007) Tracer v.1.5. Computer program and documentation distributed by the authors at http:/ /beast.bio.ed.ac.uk/Tracer (accessed May 2012).
  • Rohland, N. & Hofreiter, M. (2007) Comparison and optimization of ancient DNA extraction. BioTechniques, 42, 343-352. http://dx.doi.org/10.2144/000112383
  • Rohland, N., Siedel, H. & Hofreiter, M. (2004) Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens. BioTechniques, 36, 814 -821.
  • Rowley, D.L., Coddington, J.A., Gates, M.W., Norrbom, A.L., Ochoa, R.A., Vandenberg, N.J. & Greenstone, M.H. (2007) Vouchering DNA-barcoded specimens: test of a nondestructive extraction protocol for terrestrial arthropods. Molecular Ecology Notes, 7, 915-924. http://dx.doi.org/10.1111/j.1471-8286.2007.01905.x
  • Schander, C. & Halanych, K.M. (2003) DNA, PCR and formalinized animal tissue - a short review and protocols. Organisms Diversity and Evolution, 3, 195-205. http://dx.doi.org/10.1078/1439-6092-00071
  • Shaffer, H.B. & Thomson, R.C. (2007) Delimiting species in recent radiations. Systematic Biology, 56, 896-906. http://dx.doi.org/10.1080/10635150701772563
  • Shapiro, B. & Hofreiter, M. (2012) Ancient DNA: methods and protocols. Humana Press, Springer, New York, 247 pp.
  • Shedlock, A.M., Haygood, M.G., Pietsch, T.W. & Bentzen, P. (1997) Enhanced DNA extraction and PCR amplification of mitochondrial genes from formalin-fixed museum specimens. BioTechniques, 22, 394-400.
  • Stuart, B.L., Dugan, K.A., Allard, M.W. & Kearney, M. (2006) Extraction of nuclear DNA from bone of skeletonized and fluidpreserved museum specimens. Systematics and Biodiversity, 4, 133-136. http://dx.doi.org/10.1017/S1477200005001891
  • Swofford, D.L. (2003) PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland, MA.
  • Tchernavin, V.V. (1944) A revision of the subfamily Orestiinae. Proceedings of the Zoological Society of London, 114, 140- 233. http://dx.doi.org/10.1111/j.1096-3642.1944.tb00218.x
  • Turci, M., Sardaro, M.L.S., Visioli, G., Maestri, E., Marmiroli, M. & Marmiroli, N. (2010) Evaluation of DNA extraction procedures for traceability of various tomato products. Food Control, 21, 143-149. http://dx.doi.org/10.1016/j.foodcont.2009.04.012
  • Vila, I. (2006) A new species of killifish in the genus Orestias (Teleostei: Cyprinodontidae) from the Southern High Andes, Chile. Copeia, 472-477. http://dx.doi.org/10.1643/0045-8511(2006)2006[472:ANSOKI]2.0.CO;2
  • Vila, I., Pardo, R. & Scott, S. (2007) Freshwater fishes of the Altiplano. Aquatic Ecosystem Health and Management Society, 10, 201-211. http://dx.doi.org/10.1080/14634980701351395
  • Vila, I. & Pinto, M. (1986) A new species of Killifish (Pisces, Cyprinodontidae) from the Chilean Altiplano. Revue d'Hydrobiologie Tropicale, 19, 233-239.
  • Vila, I., Scott, S., Mendez, M.A., Valenzuela, F., Iturra, P. & Poulin, E. (2011) Orestias gloriae, a new species of cyprinodontid fish from saltpan spring of the southern high Andes (Teleostei: Cyprinodontidae). Ichthyological Exploration of Freshwaters, 22, 345-353.
  • Villwock, W. (1962) Die Gattung Orestias (Pisces, Microcyprini) und die Frage der intralakustrischen Speziation im Titicaca- Seengebiet. Verhandlungen der Deutschen Zoologischen Gesellschaft Wien 1962, Zoologischer Anzeiger, 26, 610-624.
  • Villwock, W. (1986) Speciation and adaptive radiation in the Andean Orestias fishes. In: Vuilleumier, F. & Monasterio, M. (Eds.) High altitude tropical biogeography. Oxford University Press, Oxford, pp. 387-403.
  • Villwock, W. & Sienknecht, U. (1995) Intraspezifische variabilitat im genus Orestias Valenciennes, 1839 (Teleostei: Cyprinodontidae) und zum problem der artidentitat. Mitteilungen aus dem Hamburgischen Zoologischen Museum und Institut, 92, 381-398.
  • Villwock, W. & Sienknecht, U. (1996) Contribucion al conocimiento e historia de los peces Chilenos. Los Cyprinodontidos del genero Orestias Val. 1839 (Teleostei: Cyprinodontidae) del Altiplano Chileno. Medio Ambiente, 13, 119-126.
  • Wandeler, P., Hoeck, P.E.A. & Keller, L.F. (2007) Back to the future: museum specimens in population genetics. Trends in Ecology and Evolution, 22, 634-642. http://dx.doi.org/10.1016/j.tree.2007.08.017
  • Wirgin, I., Maceda, L., Stabile, J. & Mesing, C. (1997) An evaluation of introgression of Atlantic coast striped bass mitochondrial DNA in a Gulf of Mexico population using formalin-preserved museum collections. Molecular Ecology, 6, 907-916. http://dx.doi.org/10.1046/j.1365-294X.1997.00271.x
  • Wisely, S.M., Maldonado, J.E. & Fleische, R.C. (2004) A technique for sampling ancient DNA that minimizes damage to museum specimens. Conservation Genetics, 5, 105-107. http://dx.doi.org/10.1023/B:COGE.0000014061.04963.da
  • Yang, D.Y., Eng, B., Waye, J.S., Dudar, J.C. & Saunders, S.R. (1998) Improved DNA extraction from ancient bones using silica-based spin columns. American Journal of Physical Anthropology, 105, 539-543. http://dx.doi.org/10.1002/(SICI)1096-8644(199804)105:4<539::AID-AJPA10>3.0.CO;2-1
  • Yang, D.Y. & Watt, K. (2005) Contamination controls when preparing archaeological remains for ancient DNA analysis. Journal of Archaeological Science, 32, 331-336. http://dx.doi.org/10.1016/j.jas.2004.09.008
  • Yue, G.H. & Orban, L. (2001) Rapid Isolation of DNA from Fresh and Preserved Fish Scales for Polymerase Chain Reaction. Marine Biotechnology, 3, 199-204. http://dx.doi.org/10.1007/s10126-001-0010-9
  • Zhang, J. (2010) Exploiting formalin-preserved fish specimens for resources of DNA barcoding. Molecular Ecology Resources, 10, 935-941. http://dx.doi.org/10.1111/j.1755-0998.2010.2838.x