Published July 27, 2021
| Version v1
Dataset
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CircaSCOPE demo input for CellProfiler pipeline
Description
This is a demo dataset to use as input images for the CellProfiler pipeline of CircaSCOPE. Images were retrieved with IncuCyte Zoom microscope (Essen BioScience).
The images are arranged in directories as follows: YYMM/HH/Vessel/Well-Site-Channel.tif
[YY - year,
MM - month,
HH - hour,
Vessel - the vessel number, in this demo- 479 contains untreated control, and 480 contains 100nM Dexamethasone-treated cells
Well - coordinates in 24-well plate
Site - the field of view number inside each well, between 1-16
Channel - C1- green, C2- red, P- phase]