Published July 22, 2021
| Version v1.7.4
Software
Open
johnlees/pp-sketchlib: Sketchlib 1.7.4
Description
New features:
- Sketching kernel overhaul: should be faster, and supports read datasets larger than the device memory size (#63 #64)
- Increase the size of the countmin table on GPUs to 2^30 columns, takes up about 30% of a 3090's memory
- Better progress meter for read sketching
- Save whether the DB was calculated using the reverse complement strand
Bug fixes:
- Fix indices for reference vs query distance calculations, hit when reaching ~100k queries
- If sketching craps out early, save the successful sketches up until that point to the HDF5 DB without corrupting it, so it can be joined later.
Other:
- Refactor the CUDA code a bit, putting classes into their own files.
Files
johnlees/pp-sketchlib-v1.7.4.zip
Files
(25.8 MB)
| Name | Size | Download all |
|---|---|---|
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md5:c1b0c9e87567c3a055bfcba209d891fc
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25.8 MB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/johnlees/pp-sketchlib/tree/v1.7.4 (URL)