BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes
Authors/Creators
- 1. Bioinformatics Group, Wageningen University
- 2. Department of Bioengineering and ChEM-H, Stanford University
Description
This repository contains the supplemental data for the "BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes" manuscript
1) HOMD_genome_ids.txt
1,440 Assembly ids of the HOMD genomes used (http://www.homd.org/)
2) Streptococcus_genome_ids.txt
170 Streptococcus assembly ids
3) BiG-MAP_results_96_samples_gutSMASH_core.zip
BiG-MAP results using the 96 metagenomic oral samples in combination with the gutSMASH results run on the 1,440 HOMD genomes
4) BiG-MAP_results_96_samples_antiSMASH_whole.zip
BiG-MAP results using the 96 metagenomic oral samples in combination with the antiSMASH results run on the 170 Streptococcus genomes
5) Grinder simulated data tables containing genome's relative abundance
Files
1.HOMD_genome_ids.txt
Files
(2.6 MB)
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