Published June 10, 2026 | Version v0.17.0
Software Open

PartSeg - segmentation and reconstruction tool for 3D microscopy images

Authors/Creators

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Institute of Informatics, University of Warsaw, Warsaw, Poland
  • 2. Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland
  • 3. Institute of Informatics, University of Warsaw, Warsaw, Poland

Contributors

  • 1. Centre of New Technologies, University of Warsaw, Warsaw, Poland; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland

Description

0.17.0 - 2026-06-10

🧪 Testing

  • [Automatic] Constraints upgrades: qtconsole, requests, sentry-sdk (#1375)
  • [Automatic] Constraints upgrades: ipython, numpy, pandas, pygments, requests, sentry-sdk (#1377)
  • [Automatic] Constraints upgrades: ipykernel, magicgui, napari, platformdirs, qtawesome (#1381)
  • [Automatic] Constraints upgrades: packaging, pydantic, sentry-sdk (#1386)

⚙️ Miscellaneous Tasks

  • Replace appdirspackage with platformdirs (#1373)
  • Limit superqt version below 0.8.0 when installing pyside2 as qt backend (#1374)
  • [pre-commit.ci] pre-commit autoupdate (#1378)
  • [pre-commit.ci] pre-commit autoupdate (#1382)
  • [pre-commit.ci] pre-commit autoupdate (#1387)
  • [pre-commit.ci] pre-commit autoupdate (#1392)
  • [pre-commit.ci] pre-commit autoupdate (#1402)
  • Use ubuntu-slim for check title workflow (#1403)
  • Prepare for numpy 2.5.0 by fixing the find_density_orientation implementation (#1405)
  • Drop Python 3.9 support (#1404)
  • Drop napari<0.6 and pydantic<2 (#1406)
  • [pre-commit.ci] pre-commit autoupdate (#1410)
  • Change default Qt versions from 5 to 6 (#1412)
  • Remove pyside2 from extras during constraints generation (#1411)

🛡️ Security

  • (deps) Bump codecov/codecov-action from 5 to 6 (#1379)
  • (deps) Bump github/codeql-action from 4 to 4.35.1 (#1385)
  • (deps) Bump softprops/action-gh-release from 2 to 3 (#1383)
  • (deps) Bump github/codeql-action from 4.35.1 to 4.35.2 (#1390)
  • (deps) Bump conda-incubator/setup-miniconda from 3 to 3.3.0 (#1388)

Build

  • (deps) Bump astral-sh/setup-uv from 8.0.0 to 8.1.0 (#1389)
  • (deps) Bump conda-incubator/setup-miniconda from 3.3.0 to 4.0.1 (#1394)
  • (deps) Bump github/codeql-action from 4.35.2 to 4.36.0 (#1401)
  • (deps) Bump actions/checkout from 6 to 6.0.2 in the github-actions group across 1 directory (#1408)

Files

4DNucleome/PartSeg-v0.17.0.zip

Files (7.8 MB)

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md5:9084a0f111dc16dfb44ab0c6f48e45c3
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Additional details

Related works

Is supplement to
Software: https://github.com/4DNucleome/PartSeg/tree/v0.17.0 (URL)

Software

Repository URL
https://github.com/4DNucleome/PartSeg