Dryad
Published November 26, 2018 | Version v1
Dataset Open

Data from: Ancient and contingent body shape diversification in a hyperdiverse fish radiation

Authors/Creators

  • 1. Oregon State University

Description

[No abstract entered]

Notes

Landmark Data
TPS file containing landmark data
Chapter 1_Disparity Data.TPS
Phylogenetic Tree
A nexus file containing the phylogenetic tree used in the phylogenetic comparative methods.
Chapter 1_trees_final.nexus
Principal Component scores
Principal Component scores used to construct the morphospace and also used in the mvMORPH analysis.
Chapter 1_data_all PCs.csv
PhylogeneticEM data
Data used for PhylogeneticEM analysis
Chapter 1_PhylogeneticEM_data.csv
Conevol script
Script used to run Conevol analysis in R
Chapter 1_Conevol.txt
MVmorph script
Script used to perform MVmorph analysis in R
Chapter 1_MVmorph.txt
MVmorph_uncertainty script
Script used to perform MVmorph analysis while accounting for uncertainty in the trophic ecology
Chapter 1_MVmorph_uncertainty code.txt
PhylogeneticEM script
Script used to perform PhylogeneticEM analysis in R
Chapter 1_PhylogeneticEM.R
Surface script
Script used to perform SURFACE analysis in R
Chapter 1_Phylomorpospace and Surface.txt
Co-occurrence script
Calculate the probability of at least c of m shifts in morphological regime falling on the same branches of a phylogeny as e shifts in ecology
Co-occurrence.R

Funding provided by: National Science Foundation
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000001
Award Number: DEB – 1257898

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Chapter 1_Conevol.txt

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Additional details

Related works

Is cited by
10.1111/evo.13658 (DOI)