Respiratory virus shedding in exhaled breath and efficacy of face masks

Attached 10 files to generate all figures (except Extended Data Figure 1) and tables in:
Leung NHL, Chu DKW, Shiu EYC et al. Respiratory Virus Shedding in Exhaled Breath and Efficacy of Face Masks. Nat Med 2020.

The 10 files include:
1) Dataset: G2resp_data_200324.csv
2) Data dictionary: G2resp_dictionary_200324.csv
3) R scripts: 1 x master script + 7 x sub-scripts

Please run the master script which will then source all the sub-scripts:

# Master
G2resp_00_master_script_200324.R

# Transform viral load data
G2resp_01_Viral_shedding_transformation_200324.R

# Extended Data Figure 2
G2resp_02_Weekly_number_of_respiratory_virus_infections_200324.R

# Extended Data Figure 3
G2resp_03_Respiratory_virus_shedding_200324.R

# Table 1a, Supplementary Table 1
G2resp_04_Patient_characteristics_200324.R

# Figure 1, Extended Data Figure 4, Extended Data Figure 5, Extended Data Figure 9
# Table 1b, Supplementary Table 2, Supplementary Table 3  
G2resp_05_Efficacy_of_surgical_face_masks_200324.R

# Extended Data Figure 6, Extended Data Figure 7, Extended Data Figure 8
G2resp_06_Correlation_of_respiratory_viral_shedding_between_samples_200324.R

# Supplementary Table 4, Supplementary Table 5, Supplementary Table 6 
G2resp_07_Factors_associated_with_respiratory_viral_shedding_200324.R

Funding provided by: General Research Fund, University Grants Committee, Hong Kong*
Crossref Funder Registry ID:
Award Number: 765811

Funding provided by: Health and Medical Research Fund, Food and Health Bureau, Hong Kong SAR Government*
Crossref Funder Registry ID:
Award Number: 13120592

Funding provided by: Theme-based Research Scheme, Research Grants Council, Hong Kong SAR Government*
Crossref Funder Registry ID:
Award Number: T11-705/14-N