Association of oligopaint FISH labeled super-enhancers and genes with polymerase clusters (raw data, SE1-SE6)

This data set assesses the placement of different genomic regions relative to clusters formed by RNA polymerase II in zebrafish embryos. RNA polymerase was labeled by immunofluorescence, genomic regions by oligopaint DNA fluorescence in-situ hybridization (FISH). Microscopy images were acquired by instant-SIM microscopy, and analyzed using MatLab scripts and the bioformats importer. This data set contains the raw image data as well as all further analysis scripts.

Raw image data for super enhancers SE1 to SE6