Published June 25, 2018
| Version v1
Dataset
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Supporting Files for Schiebelhut LM, Puritz JB & Dawson MN (2018) "Decimation by sea star wasting disease and rapid genetic change in a keystone species, Pisaster ochraceus" PNAS
Description
The data files associated with Schiebelhut LM, Puritz JB & Dawson MN (2018) "Decimation by sea star wasting disease and rapid genetic change in a keystone species, Pisaster ochraceus" are deposited here, including: the commented bioinformatics code, raw SNP calls, filtered SNPs, and final haplotype calls.
Notes
Raw sequence data are deposited in NCBI SRA (SRP136569).
Information about individual specimens used in analyses: Sample_metadata.xlsx
Commented bioinformatics code: CommentedBioinformaticsCode.html
Raw SNP file: TotalRawSNPs_keep.Pisaster_171005.recode.vcf
Filtered SNP file: SNP.DP3g98maf01_85INDoutFIL.NO2a.HWE.FIL.recode.vcf
Filtered haplotype file: SNP.DP3g98maf01_85INDoutFIL.NO2a.HWE.FIL.recode_RADHAP.genepop