hbbrandao/bacterialSMCtrajectories: Bacterial_SMC_complex_Simulations

These codes were used to perform data analysis of bacterial Hi-C data, and model the process of DNA-loop extrusion by SMC complexes. The codes contained here pertain to the following two publications.

1. Brandão, H. B., Paul, P., van den Berg, A., Rudner, D. Z., Wang, X., & Mirny, L. A. (2019). RNA polymerases as moving barriers to condensin loop extrusion. PNAS 116 (41) 20489-20499
2. Brandão, H. B., Ren, Z., Karaboja, X., Mirny, L. A., & Wang, X. (2020). DNA-loop extruding SMC complexes can traverse one another in vivo. BioRxiv. https://doi.org/10.1101/2020.10.26.356329