Published June 7, 2021 | Version v0.1
Dataset Open

ATOM3D: Protein-Protein Interactions (PPI) Dataset

Creators

  • 1. Stanford University
  • 2. University of Chicago

Description

Protein-Protein Interactions (PPI) dataset from the ATOM3D project. This upload includes three zipped data directories:

  1. Full, unsplit dataset in LMDB format
  2. Split datasets, with each in LMDB format
  3. Text files containing train, validation, and test indices used to split raw dataset
  4. README containing dataset details

 

Files

README.md

Files (44.4 GB)

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md5:40b9f6117acffaa9ef14f30ccf40bfc3
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Additional details

References

  • Townshend, R. J. L. et al. ATOM3D: Tasks On Molecules in Three Dimensions. In review (2020). http://arxiv.org/abs/2012.04035.
  • Townshend, R. J. L., Bedi, R., Suriana, P. A. & Dror, R. O. End-to-end learning on 3D protein structure for interface prediction. in Advances in Neural Information Processing Systems (eds. Wallach, H. et al.) vol. 32 15616–15625 (Curran Associates, Inc., 2019).
  • Vreven, T. et al. Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2. J. Mol. Biol. 427, 3031–3041 (2015)