Photosynthesis and respiration at the leaf and canopy scales

Analysis code for photosynthesis and respiration at the leaf and canopy scales for Eucalyptus tereticornis trees grown in whole-tree chambers at the Hawkesbury Forest Experiment. This is an archive of a git repository (https://github.com/jedrake/wtc3_flux_share/) which downloads the data and reproduces figures for the New Phytologist manuscript entitled:"Does physiological acclimation to climate warming stabilize the ratio of canopy respiration to photosynthesis?" by Drake JE, MG Tjoelker, MJ Aspinwall, PB Reich, CVM Barton, BE Medlyn, R Duursma

There are two ways to download and use this code.

(1) I recommend that you clone this repository into an Rstudio project by copying the HTTPS link (https://github.com/jedrake/wtc3_flux_share.git), and pasting the link into a new Rstudio project URL (File > New Project > Version Control > Git). You will also need git. This process is described in useful detail here: http://www.molecularecologist.com/2013/11/using-github-with-r-and-rstudio/ .

(2) You could also choose to download a zip file of this repository. Upzip it in a location of your choosing and update the setwd() command near the top of “main_script.R” accordingly. This is simpler and does not require git.