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Published May 18, 2021 | Version 1
Dataset Open

PucciDB: A LTR-retrotransposon library of Pucciniales

Authors/Creators

  • 1. Universidad Autónoma de Manizales. Universidad de Caldas
  • 2. Universidad Autónoma de Manizales
  • 3. Universidad de los Andres
  • 4. Institut de Recherche pour le Développement (IRD), CIRAD, Université de Montpellier

Description

Rusts are fungi that infect plants, and specially, some important crops such as wheat and coffee. There are several rust genomes sequenced and release in databases like NCBI, but there is no deep studies in the dynamics and structures of transposable elements and in LTR-retrotransposons. Here, we created a lineage-level classified library of LTR-retrotransposons that can be used to annotate rust genomes (the complete-element version) or to classify elements detected in those genomes (using the domain version). We used 22 rust species to create this library.

Files

Files (356.3 MB)

Name Size
md5:0240aae9157d5de9b93d74f59d656716
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md5:27f808549bb51035eb0a435611bd4919
345.3 MB Download