Published May 16, 2021
| Version v1
Dataset
Open
Effect of local topography on cell division of Staphylococci sp.
Description
Dataset.zip
This dataset includes the raw and annotated images used to train a Stardist 2D deep learning model for segmentation of surface attached S.aureus as described in Effect of local topography on cell division of Staphylococci sp.
Stardist2d_Model.zip
Stardist 2D deep learning model for segmentation of surface attached S.aureus, obtained using the StarDist 2D ZeroCostDL4Mic notebook (v 1.12.3).
Notes
If you find this data useful, please cite:
- Main Article: Effect of local topography on cell division of Staphylococci sp. - In progress
- ZeroCostDL4Mic: von Chamier, Lucas & Laine, Romain, et al. "Democratising deep learning for microscopy with
ZeroCostDL4Mic." Nature Communications (2021).
- StarDist 2D: Schmidt, Uwe, et al. "Cell detection with star-convex polygons." International Conference on Medical
Image Computing and Computer-Assisted Intervention. Springer, Cham, 2018.
- Augmentor: Bloice, Marcus D., Christof Stocker, and Andreas Holzinger. "Augmentor: an image augmentation library
for machine learning." arXiv preprint arXiv:1708.04680 (2017).
Files
Dataset.zip
Files
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