Published May 12, 2022
| Version v2.0
Software
Open
Gregor-Mendel-Institute/aradeepopsis: v2.0
Authors/Creators
Description
New Features
- ported pipeline code to Nextflow DSL2
Fixes and improvements
- fixed a bug that lead to invalid dimensions for input images with certain aspect ratios
- moved hosting of pretrained models and test data to Azure (thanks @ebirn)
- added CITATION.cff
Dependency updates
- dropped
r-shinythemesdependency asr-shinynow has bootstrap 5 support - added version pinning for
R 4.1.3 - updated
r-shiny1.6.0>1.7.1 - updated
tensorflow-base2.4.1>2.7.1 - updated
imagemagickdependency7.0.11_12>7.1.0_33 - updated
r-corrplotdependency0.88>0.92 - updated
r-jpegdependency0.1_8.1>0.1_9
Notes
If you use this software, please cite it as below.
Files
Gregor-Mendel-Institute/aradeepopsis-v2.0.zip
Files
(1.7 MB)
| Name | Size | Download all |
|---|---|---|
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md5:95c735737f5474fce5870ef9031e6564
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1.7 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Journal article: 10.1105/tpc.20.00318 (DOI)
- Software: https://github.com/Gregor-Mendel-Institute/aradeepopsis/tree/v2.0 (URL)