tardis-sn/tardis: TARDIS v3.0.dev3945

• e3a35bb09be710e1f63ffc586c28c61f2857da05 create update refdata pipeline (#1434) [ #1435, #1436, #1439 ]
• c384d742efc03fd50440630381664b2d63100f59 Adding Config Value Validation for Different Parameters via Config File (#1554)
• 923e59dda979758378c07f9cd9884e91681149a0 Numba formal integral (#1549)
• 64a6369290e81533519c5e3d83d2c147186fd0dc resolves issue #1370 bad YAML Output (#1546)
• 747390d22ef8a9b73904b17e17d12ebaa15f746f Restructuring r_packet.py (#1543)
• 2c845d8245b552a282a88bacf92af0f389f64e83 Add ion contributions to SDEC plotter (#1539)
• 6b44bc808cfe288cf6e0c3f646a7a6d743b1ffea Fix issue 1485 SDEC label bugs (#1531)
• f9b3ca8efaba811398002ac2ec3ff6af2e9e064a String formatting changes fix issue #1205
• c60673b75e14bae8694021b849a83b18bb098561 Added workflow for Documentation preview generation (#1493)

• 888575d4244ced6a327097b20c84980afff758a6 fix version number displayed in docs (#1540) <details><summary><b>See More</b></summary>

• a15551c111f1c3ae7296b20617e4e8f67753f839 clean template files (#1538)

• ee889c89908ff633786bcca7a03674c366518d02 Change the default number of interpolate_shells for the formal integral (#1512)
• 6816e21a0253e12d44eeefffea97531a988f3e15 Enable full tests for Formal Integral (#1499)
• c14b2cd2ea87743d47f667f724c630bf86dc92a7 Typos in git_workflow guide (#1530)
• 25a7a87b5cdc70c07e06c4d39e96b6afb9d6cda0 Fix macOS tests (pickle protocol 5) (#1535)
• b7eac7e95c48cc619fc9ff2b472cb055a3c66a21 Create a symlink of tardis_example.yml (#1478)
• 09f992fcb80b7db61d4584ef3329740272e1c4ba rtd-theme is incompatible with docutils 0.17 (#1527)
• 28e609d4e15a2c7fa80ea287d11e0c0135a99e50 enable manual trigger for docs (#1526)
• 8d7e44b71ba61b95232b1945e5cf3bb1420c95c3 Add catch for missing elements in SDEC plot (#1517)
• 011f9b7a7a381c84282e569f4791194f38289748 corrected_csvy_model_files (#1483)
• 9609cd2cca2faf85c7d729eab9865f0eace0c0fb getting rid of PerformanceWarning: indexing past lexsort depth may impact performance. (#1479)
• 8239d2929a5bef3c5a99b7d0b6d0a47961a205ec Add ability to plot only top contributing elements to SDEC plot (#1506)
• 3534d39d4a3dbb420611180f091c80af892d9838 Collisional ionization (#1509)
• f545ede5903577fc6c3b0d3d29ac19c9461bb17d added option for keyword arguments in spectrum plot function (#1477)
• 110d8c91f7953c60f03fe656736c737350e1cd2a Updated Z value of O (#1474)
• aa12a98c5ec6cf7e80e2a2264d0b29f913748faa Feature request: add virtual-packet-logging option to run_tardis() (#1498)
• 47010f862f368d64e3a8def8c8ebd5593ac4f212 add missing / in .coveragerc file (#1502)
• df6506721cb7f2a38dd850ea5fba56db3fbbd4f8 Fix docstring mistakes in #1145 (#1492)
• 6e1cd8505cd173e5bad962e186bb0533ee960355 Fixing hyperlink (#1505)
• 47ed0cef8a535244b34a541ee93076bc685044c7 Added Documentation for Parallel execution with Numba and OpenMP (#1481)
• cf8900fac73aa9d4f549645d1a36d70771cbda14 Add photoionization-related rates (#1145)
• 9497250c7b4bfe0b0a43bbb3558cc939329c05c4 Incorporating old physics section of the documentation (#1470)
• 5b98c40acbd2b7574c8aa7139722e1045a76a9b5 Removed the deprecated --with-vpacket-logging flag (#1459)
• 50f13ba63499d5371af790025c659483ef52bfd1 Renamed widgets subpackage to visualization and restructured modules within it (#1462)
• d92464c7ee093858ff8d23ac3d9898473d284fb1 Fix the array types when interpolate_shells > 0 [ #1464 ]
• 927c606592fdb1aa2b4ad7cd4f512cb7ecc889f9 Reorganizing Models (#1454)
• 8d2c62a33923b8eae353df2fdd75066763897eff Added option to create redirects in docs configuration and redirected gui to visualization (#1458)
• 7f98210cf65973e1bd1df8a50c63125b5fc3e2a2 Merge pull request #1457 from jaladh-singhal/sdec-replot
• 0a18018d8a9590fcb8d3c15c0fa921a322db2cb4 Re-generated SDEC plots
• b2b6a6f6349ccce076fc68d1f5a10cc9afed5f06 Fixed italicised Units in sdec_plot (#1446)
• b9ab7c823d7bedd1a5ca7b402bf9dbf701483366 Add documentation for Spectral Element Decomposition Plot (#1438)
• 6a271f121837eaa7138ee6ee8d0a209647cc13fa numba_warning (#1455)
• 7f31e2bfda746fbf58a2eae12e5997807d83fcae Fixed distance parameter not producing accurate SDEC plots (#1442)
• 3ac1435cc1ca5d3a28571084e03a291c0d4efc90 fix update changelog workflow (#1432)
• 4c346f0d9987b137019bd4fd0ce2d56d6e6b2571 Rename SEDec to SDEC in Spectral element DEComposition plot (#1441)
• 1053c9036c60411572521e97ebf7cc6835f68a16 compare refdata with arbitrary labels (#1430)
• 6f898049f0f2a1fec27851fea36ef5a90d1cad07 Documentation guidelines hotfix (#1431)
• 68bc12a8b0ccdf5aa1a7a4887cc46c015b449bba Rename Kromer Plot to Spectral Element Decomposition (SEDec) Plot (#1424)
• 72fd51c4cc89d53e6a0b11b43bc170c51bea46c8 add docstr-coverage workflow (#1409)
• a6d190c7d8e7cdb1f46439d3f584a1d91052b63d Restructured development workflow and added code quality & documentation guidelines in it
• 3216283c87d99685022261a76868a4b78b72e351 Update code_quality.rst
• 600de0ebe3021d117200f05b674e85b8f04a818e Update documentation_guidelines.rst
• 1d6100bd483ffd4bb0c66379d16bad52beb3d6a2 Update documentation_guidelines.rst
• abc53ff974e24c4e256da5b8bfa32164c4b2a91b Update code_quality.rst
• 0c8602d42dc7fef78196c8ad3377e36673dd1582 Old physics docs reorganization
• 4f57e74c2b0fd2621d18ec46633e801774aaa648 CI documentation fixes
• 234ae1b185479b2679665d9567891dd9e980a7a0 fixes for ci docs
• d6e245774515a1a6a4d28ad22f16d213a13a3523 changing hyperlink text
• 9dd00989deb0d61da4778adaa9544394eb1901a8 fixing hyperlink problems that arose from changes
• cb25fa61a7c405177d39fed8dd3ff4f9da1ef91d switching physics/plasma.rst to physics/plasma/index.rst
• 5ecd64fd296a59f021a2dc44673c2f811aab0cd4 removing plasma/index
• 4a6a8a665f49f4b67bd917d97327585efa3b9ce2 Fix for packet output data types
• 98baa3997f867fdc56a964f59e202833f2701c82 Fix for int64 datatype of variables
• 6a8403b657f7cc2d5ce7ecc66f1969904696b202 Fixing Hyperlinks in Documentation
• 077ec9928a0811eb8f460a705a51c380b7d72098 Update PULL_REQUEST_TEMPLATE.md
• 9cab1ba06a650620b6c6f4a858c256b5ae3de771 Post reference data results
• 12d9ebbacc58c90cdd4ac6e4f6b7fb1b653db6a0 Add .log to gitignore, disabled montecarlo log
• 1e87cf6eb00e13c64a9cffab798faf18f536d11d moving old_plasma file
• 66f3d8fd1345d8320c8d6210e3c964b422ffa4ec moving old_plasma to under old_physics
• 54cc315fdc3e7483f11a95bd09a132e7bbaa900f adding old_plasma section to toctree
• b941dc26301e4e83fe584310ba2fb911c73bfc91 two more fixed hyperlinks
• 25c31934b8f68278094213401dea33745acf9b16 Inserted missing links in Contributing.md
• ae19c5f34cf82a28e6debf73c19603e2c46929d9 Edited code quality guidelines
• fe101597291b3f6ae28c99d450d5c3d5eab55ab1 Add .log to gitignore, disabled montecarlo log
• 5078bf447bf5d0f4998ca1e4864922b3b3144a2e Added running tests to index
• 8f9a0fde585de5e78c2772df381e56b754800a66 Edited documentation guidelines
• a2324e509a62f157e73fcc3bd5dd45f0db8c0849 Moved documentation guidelines to a separate rst file
• ca81bd5350efe2f01cfb3a728b71430dcd3066db Restructured developer workflow toctrees
• 586ea4395d4b0bf09e0a5051572ee9b412c2c5e4 Update packet_source.py
• 0fbdf1d6750a53169f1ffeaffc5373c21efc1795 Update single_packet_loop.py
• 0656db153b21a09d87464a884732091b073adb17 Update r_packet.py
• 6e63544380c9f2fbf88bdf8132356c38ab0fee73 Update numba_interface.py
• 30762d1515e35fe7414f657f0ce7cdc72c91247a Update numba_interface.py
• cf1b367fd63544c18041eae2db3a08035fda4dfc Update docs/Code_Quality_Guidelines.rst
• c741faa0e3f7e22cdcfb828fed85b7ac9e645865 Update docs/Code_Quality_Guidelines.rst
• 9ab7de73c148432bec2608a18fe0a53d461c612e initial commit
• 9b5e21a8de0bb85fc7e7073b304d3a7d2e757766 Update single_packet_loop.py
• 2c6e472bcb6ec18f4d35aa21e8eb63ccd0895308 Update r_packet.py
• cf78251736112dddeab3e17591745a072c4bc6ed Update numba_interface.py
• fc6af1d466be93af8faef85b3f505b50129053b0 Update index.rst
• 369a664c7da4abb3038afa7c7de58b91664a77ee Update git_workflow.rst
• 0713ed3cce1806bd16563baccee20a59eda93cd1 Merge branch 'Issue_1252_1170' of github.com:KevinCawley/tardis into Issue_1252_1170
• e8df255a2564d0c928b9539d5ed29046e8a1ff7b Added naming conventions to its own section as it's important
• 07c663c3b96649e7e738b3c3f24e8a8aadd92d13 Delete coding_guide.rst
• 68f975acbafa6065f79e61501ed0c971058e6b6e Delete building_local_docs.rst
• 07605cbfada038581408e6c98f249ce6950de36f Delete Documentation_Guidelines.rst
• 58e3255e7f9aef4cdbfcf84f9ac07b9e6f101427 Added section of edge cases and exception handling
• bfad2c8e1b1a586ae3e81a83059a1184584c6a58 Update to files descriptions and explanations, fixed grammar
• e11ae86a935cc923de4ea40142ad90fa8c943957 Merge remote-tracking branch 'upstream/master' into Issue_1252_1170
• 9885897e03f613c3c5b00e5686c1e6e637c9a6f4 Update to docs on code quality and guidelines
• f96c2fd6318a7d7144cbf7c3ccbecc9dbc75e479 trying to fix syntax
• 588fda74ee1d8e6e634926dfa43c69e0cbf69d52 changes to make proper syntax
• 16f24cd8a014dacd6b696f75777ac09af4a33a78 Fixed missing file
• db06eb6ef5608a3e01e2e085080409b1f119a579 fix of syntax for local compile, and removed section of index where those files no longer exist
• dc87c67dddd1bf71ce163f0e1892099fd7714a50 fixing some indentation and syntax errors
• 373b0d509d74e18b54398e5819c46435b791a220 trying to get documentation to build
• 91616bb4c5a0383d91dead8bb8d561f01d727d62 removed random sn
• 398f5889ad3683a982dcb4d614ca45bc2a6987be Updates to files, testing out display in tardis
• 3570427954b8a0b9cfbc43d5782db3d8ddfa6f39 Merge branch 'Issue_1252_1170' of github.com:KevinCawley/tardis into Issue_1252_1170
• 0fa6de48cb74d80723906901594876f52085ec55 work done on docs
• 77dabb2fc1e41470cd09143091e83258a622fb77 Fixing merge conflicts
• ccbd676caeae43bafe3edbd2c814dff752c8aee0 will this fix work
• a4d6003cc3bfc9a827f549166d22c7858357c321 updates to these two files
• 43129aff4b9630533c09eb11bdb234b1cbe86fa9 trying to fix merge conflicts
• a8450ea5ade08067f25cac0461da3ee7d83e9b81 Merge branch 'Issue_1252_1170' of github.com:KevinCawley/tardis into Issue_1252_1170
• b6c35fb41044fa42fe2160e7f82c56426954ca89 trying to fix my branch
• 49652c935d106bba277540293bec77af96a7a771 fixing header on montecarlo_old
• 04a5f9cc2423a9effdcd1f81dae067623dbe9ace fixing more links
• 3f722e864f900c9145b861c400f13a582531506b fixing links in to_hdf
• 19717f816caaed6ab517c59693e27446db544897 adding label to physical_quantities
• 93eaa7c911da0a8b6cc38f8454a292ca6e0a71be fixing some hyperlinks
• f401f05f27eb22d8d0eb974fa993b45232f7f291 fixing merge conflicts
• b3159270c68232a631f0ee4ce3e72977a8b067c9 Update to fix merge conflitcs
• 9493122db65d94017330344e175e9cdb3eb9845f removed the nbsphinx_allow_errors = True
• be92206d07ccd1cfdd0e387f6f09c22623b90d55 adding title to current_public_table.rst
• 16362df5db39eed28947fd61d7fa0463f0d49758 fix merge conflict
• 227af89b4f314eaa8bfd728b7c094072bbdcaf33 Merge remote-tracking branch 'upstream/master'
• fc1798b8a2eb88ef3f4649026ac8f129b63b6daf update to the docs
• af2f6b3fa795e4127f37cffb922d9d7247d0578e slight update to the file
• 2ee46b25e116015b98c674dcb7161f4fe2c54d40 Remove extra carriage return
• a82ccd34d27c0a6841b9b6f36aec8d32b870ee4d Merge branch 'master' into Issue_1154
• 6a26d573612beecfe65f1f90b6603cada1892404 revert to conf.py
• f6f53f7ab458567ca3feeb1dea9dc9fb32113137 Trying to fix merge conflict
• 5b4265b58d8e9359c02d8917e7cb64c799dfb811 Update to progress on this branch
• 176a63248ecea4ccec89a19597812b2e1d8fcf00 First start on the two .rst files for the issues
• c3b5fa1008127aafdf762426993093daab662b28 Fixed the latex equation
• 303c7e1919ccd70bb1fcca685488c42c50464e92 Fixed to the montecarlo_numba file to compy w/ issue #680

This list of changes was auto generated.</details>