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Published May 11, 2021 | Version v1.9.0
Software Open

ENCODE-DCC/chip-seq-pipeline2: v1.9.0

Authors/Creators

  • 1. Stanford University
  • 2. Truwl
  • 3. The University of Chicago

Description

Conda users must update pipeline's environment

$ bash scripts/update_conda_env.sh

Added a new parameter to fix random seed for pseudoreplication.

  • This parameter controls random seed for shuffling reads in a TAG-ALIGN during pseudoreplication.
    • GNU shuf --random-source=some_hash_function(seed).
  • chip.pseudoreplication_random_seed: Any positive integer is allowed.
  • If 0 (default) then input TAG-ALIGN's file size (in bytes) is used for the random seed.

Files

ENCODE-DCC/chip-seq-pipeline2-v1.9.0.zip

Files (1.6 MB)

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md5:ac5ce2a4b7a7294ba1d8cf520fff7154
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Additional details

Related works

Is supplement to
https://github.com/ENCODE-DCC/chip-seq-pipeline2/tree/v1.9.0 (URL)