There is a newer version of the record available.

Published May 11, 2021 | Version v0.5.2
Software Open

seq2science

Authors/Creators

  • 1. Radboud University

Contributors

Project member (2):

  • 1. Radboud University

Description

Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and RNA-seq workflows.

Added
  • added rule for scRNA post-processing R Markdown for plate/droplet based scRNA protocols (experimental)
  • added explanation for kb_seurat_pp rule
  • heatmap of N random peaks to the multiqc report in the end
Fixed
  • removed a warning of genome.fa.sizes already existing due to being already being downloaded beforehand (it's removed in between)
  • genomepy's provider statuc checking not being used.

Files

vanheeringen-lab/seq2science-v0.5.2.zip

Files (6.1 MB)

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md5:e5315d5ca08d2bc0bc17836b366a1e68
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Additional details

Related works

Is supplement to
https://github.com/vanheeringen-lab/seq2science/tree/v0.5.2 (URL)