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Published May 9, 2021 | Version 1.6.1
Software Open

nf-core/methylseq: nf-core/methylseq version 1.6.1 [Nauseous Serpent]

Creators

  • 1. Science for Life Laboratory
  • 2. Boehringer Ingelheim
  • 3. QBiC @qbicsoftware
  • 4. National Genomics Infrastructure
  • 5. Seqera Labs
  • 6. @SciLifeLab | Karolinska Institutet
  • 7. The Babraham Institute
  • 8. The Francis Crick Institute
  • 9. CLEVELAND CLINIC
  • 10. INRAE

Description

Minor release to fix a bug in the command for the Bismark alignment. This change should have no effect on the pipeline output, though single-end alignments with Bismark should now be 2x faster. See issue #210 for full investigation.

Pipeline Updates
  • Added new config profile to run minimal test paired-end dataset, with -profile test_paired. Added to the CI tests.
Bug fixes
  • Fixed silent bug in Bismark alignment command that had no effect on the output (#210)
Software updates
  • Picard 2.25.1 > 2.25.4
  • MultiQC 1.10 > 1.10.1

Files

nf-core/methylseq-1.6.1.zip

Files (3.8 MB)

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md5:13855ccc10cd95429bc6b0db1b17f4d1
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Additional details

Related works

Is supplement to
https://github.com/nf-core/methylseq/tree/1.6.1 (URL)