epiforecasts/covidregionaldata: 0.9.3

This is largely a patch release dealing with processing issues introduced by the recent release of tidyr 1.2.0. In addition support for data from Estonia and Vietnam has been added. See the full release notes for details. Thanks to @RichardMN, @biocyberman, @Bisaloo, @sbfnk, and @kathsherratt for contributing to this release.

• Support for level 1 region data in Estonia (thanks to @RichardMN). See ?Estonia for details.
• Support for level 1 region data in Vietnam (thanks to @biocyberman). See ?Vietnam for details. Note that this class is only available if installing the vietnam branch from GitHub due to API instability issues.

• Change the data source for Switzerland to draw data from the Swiss Federal Office of Public Health (FOPH)
• Updated the package logo to include the newly supported data sets.
• Reduced the number of package dependencies (@bisaloo and @RichardMN)
• Added tests for JSON download code (@RichardMN).

• Fixed a bug in fill_empty_dates_with_na() caused by changes made in version 1.2.0 of tidyr.
• Fixed a bug in the data sourced from Germany so that instead of treating it as a line list of individuals it is treated as a relatively finely resolved count data which needs to be summed up (by @sbfnk).
• Fixed a bug in the Vietnam class due to stringr (#448 by @RichardMN).
• Fixed a bug with the Netherlands class were the lack of Hospitalisation data in the source was causing the class to fail (#446 by @RichardMN).
• Fixed an issue with the Colombia data and reduced dependencies by making RSocrata be a suggested package (#433 by @RichardMN).

• get_interventions_data() has been depreciated and removed.
• get_info_covidregionaldata() has been depreciated and removed.
• The country argument to get_national_data() has been depreciated and removed. It's functionality can be replicated using the countries argument.
• get_linelist() has been updated to fail on use vs warn on use and will be removed from future versions of the package.

• Fixing paper formatting. by @arfon in https://github.com/epiforecasts/covidregionaldata/pull/395
• fixed Richards last name by @joseph-palmer in https://github.com/epiforecasts/covidregionaldata/pull/396
• added link to discord chat in readme badge by @joseph-palmer in https://github.com/epiforecasts/covidregionaldata/pull/401
• Fixes citation by rebuilding readme by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/402
• Make bot less bossy by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/407
• Add Estonia data by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/417
• Add subnational data for Vietnam by @biocyberman in https://github.com/epiforecasts/covidregionaldata/pull/413
• Update vietnam url and docs by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/428
• Update stable API URL of Vietnam by @ilumitr in https://github.com/epiforecasts/covidregionaldata/pull/427
• fix Germany case/death data by @sbfnk in https://github.com/epiforecasts/covidregionaldata/pull/436
• Remove action re-building JOSS paper by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/438
• Fix giant logo by specifying width instead of height by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/442
• Switch to bootstrap 5 for pkgdown by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/443
• New data source for Switzerland - fix for #412 by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/429
• Update pr-checklist.yaml to include news nudge by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/439
• Reduce the number of Imports by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/437
• Fix website URL by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/444
• Hugo: ctb -> aut by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/416
• Don't rely on exact column ordering when grouped data is involved by @DavisVaughan in https://github.com/epiforecasts/covidregionaldata/pull/445
• Fix lintr warnings by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/450
• Bug 454 countrycode by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/455
• Bug #449 tidyr complete by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/453
• Refactor Vietnam cleaning code and change string conversion function - fixes #447 by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/448
• Depreciations by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/456
• Add tests for json_reader function and sample json data by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/451
• Adjust for Netherlands - remove Hospitalisation data - partial fix for #430 by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/446
• Alternate fix colombia data 430 which makes RSocrata suggested by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/433
• Bug: #460 Colombia failing tests by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/461

• @arfon made their first contribution in https://github.com/epiforecasts/covidregionaldata/pull/395
• @biocyberman made their first contribution in https://github.com/epiforecasts/covidregionaldata/pull/413
• @ilumitr made their first contribution in https://github.com/epiforecasts/covidregionaldata/pull/427
• @DavisVaughan made their first contribution in https://github.com/epiforecasts/covidregionaldata/pull/445

Full Changelog: https://github.com/epiforecasts/covidregionaldata/compare/0.9.2...v0.9.3