Published May 5, 2021
| Version v0.2.5
Software
Open
ICB-DCM/pyPESTO: pyPESTO 0.2.5
Authors/Creators
- 1. Helmholtz Munich + TUM
- 2. Harvard Medical School
- 3. ICB, Helmholtz Center Munich
- 4. IRU Biomathematics @ Uni Bonn
- 5. @ICB-DCM @ICBmunich
- 6. Helmholtz Center Munich, TUM
- 7. Meyer Chroma Technology (MCT)
Description
Objectives:
- New Aesara objectve (#623, #629, #635)
Sampling:
- New Emcee sampler (#606)
- Fix compatibility to new Theano version (#650)
Storage:
- Improve hdf5 storage documentation (#612)
- Hdf5 history for MultiProcessEngine (#650)
- Minor fixes (#637, #638, #645, #649)
Visualization:
- Fix bounds of parameter plots (#601)
- Fix waterfall plots with multiple results (#611)
CI:
- Move CI tests on GitHub Actions to python 3.9 (#598)
- Add issue template (#604)
- Update BionetGen Link (#630)
- Introduce project.toml (#634)
General:
- Introduce progress bar for optimization, profiles and ensembles (#641)
- Extend gradient checking functionality (#644)
Minor fixes:
- Fix installation of ipopt (#599)
- Fix Zenodo link (#601)
- Fix duplicates in documentation (#603)
- Fix least squares optimizers (#617 #631 #632)
- Fix trust region options (#616)
- Fix slicing for new AMICI release (#621)
- Refactor and document latin hypercube sampling (#647)
- Fix missing SBML name in PEtab import (#648)
Files
ICB-DCM/pyPESTO-v0.2.5.zip
Files
(4.2 MB)
| Name | Size | Download all |
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md5:f31ec9bb58cf75d990f65bd17f2957bf
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Additional details
Related works
- Is supplement to
- https://github.com/ICB-DCM/pyPESTO/tree/v0.2.5 (URL)