GEOS-ESM/MAPL: MAPL 2.6.5

MAPL 2.6.5 is a zero-diff patch release on MAPL. (NOTE: For unknown reasons, this is non-zero-diff when running the 2-moment microphysics in GEOSgcm. Nothing in MAPL was a floating-point change, so we believe this is due to issues in the 2-moment code itself.)

• pFIO/KeywordEnforcer.F90 duplicated functionality now in shared/KeywordEnforcer.F90, and has been removed in favor of the other.

• A new flag to timestamp average collections at the beginning of the averaging interval
• Ability to run MultiGroupServer and model in a single node
• Add command line option --one_node_output
• Ability to split fields with ungridded dimensions (and not only 4d).
• Ability to add alias names to the split fields
• Added MAPL_SimpleBundleCreateEmpty procedure to MAPL_SimpleBundleCreate.
• Add MAPL_TransposeaRegridderMod to MAPL_Mod
• Nearest-neighbor interpolation option for ExtData (keyword: 'E')
• Added pflogger_stub directory. With -DBUILD_WITH_PFLOGGER=OFF, it is built and linked to replace pFlogger library.
• Added new CI test using Intel oneAPI
• Add function to free communicators that is split by SimpleCommSplitter
• Add with_io_profiler option

• Changed the interface to TimeData to have an optional "funits" argument (defaults to "minutes")
• Changed time units to "days" for monthly collections
• Simplified the logic for timestamping offsets
• Setting and getting UNGRIDDED_DIMS attribute uses now single quoted string
• Do not output cubed_sphere and orientation variables in native History output as pFIO at present does not handle string variables
• Updated Python scripts to work with Python 2 or 3. Scripts were:
  • base/mapl_tree.py
  • base/mapl_vlist.py
  • Apps/MAPL_GridCompSpecs_ACG.py
  • Nullified pointers for deactivated optional state elements for the grid compe spec code generator ACG.
• Updated components.yaml:
  • ESMA_env v3.2.0 (Baselibs 6.1.0 <==> ESMF 8.1.0)
  • ESMA_cmake v3.3.9 (adds ability to see GFE namespace option, BUILD_WITH_PFLOGGER)
• Update CI images to 6.1.0
• Updated MAPL to have the ability to use the new GFE namespace in CMake. (gftl --> GFTL::gftl).
  • The default in ESMA_cmake v3.3.8 is not enabled. To enable use -DESMA_USE_GFE_NAMESPACE=ON.
  • NOTE: This requires Baselibs 6.2.0 or higher when using Baselibs.
• Updated the non-PersistSolar branch of MAPL_SunGetSolarConstantFromNRLFile to use Solar Cycle 24 as we are now in Cycle 25.

• Add _RETURN(_SUCCESS) to MAPL_SimpleBundle routines
• Fixed possibly uninitialized values when handling members of Segment_T derived type. Helps on the Rome nodes.
• Fixed print diagnostics for monthly collections (proper reporting of frequency, duration, eliminated acc_interval)
• Fixed another bug related to the incorrect time increment for monthly averaged collections
• Fixed few memory leaks (average and stampOffset arrays were allocated twice)
• Fixed a bug related to incorrect time increment attribute for a monthly collection
• Fixed a bug related to the naming scheme for split fields when ungrid size is 1
• Fixed unset UNGRIDDED_DIMS attribute bug
• Fixes ESMF logging errors related to expressions in History
• Fixed error handling in profiler/BaseProfiler.F90
• Fix memory leak when using fast_oserver in write_restart_by_oserver
• Bumped cube version to 2.91 in global metadata
• Change calls to system_clock() to be INT64 (#511)
• CMake updates to allow NAG Fortran build
• Converted some remaining real*8-type declarations to be real(kind=REAL64)-style
• Eliminated (almost) all compiler warnings for Intel compiler
• Removed conditional around declaring pointers in code emitted by grid comp ACG.
• Fixed bugs in ESMFL and MAPL_CFIOReadParallel to support GEOSadas
• Remove some unnecessary MPI_Comm_dup calls. Some of those call are actually bugs