There is a newer version of the record available.

Published April 27, 2021 | Version scATAC-pro_v1.3.0
Software Open

wbaopaul/scATAC-pro: scATAC-pro_v1.3.0

Authors/Creators

  • 1. Children's Hospital of Philadelphia

Description

  • qc_per_barcode: add tss enrichment score per cell into the QC metrics
  • call_cell: enable filtering barcodes with minimal tss enrichment score cutoff (parameter min_tss_escore in the updated configure_user.txt file)
  • fragments file indexed by tabix (named fragments.tsv.gz)
  • footprint module: suppoort comparison of any two sets of cell clusters
  • motif_analysis and runDA: enable seurat/matrix object in .rds format as input
  • integrate: rename cell name for each sample to avoid shared barcodes among samples; enable a distance parameter to merge peaks
  • integrate_mtx: new module added, as an alias of previous integrate_seu module

Files

wbaopaul/scATAC-pro-scATAC-pro_v1.3.0.zip

Files (15.9 MB)

Name Size Download all
md5:57df9fb881343e40a31994824eeff87f
15.9 MB Preview Download

Additional details

Related works

Is supplement to
https://github.com/wbaopaul/scATAC-pro/tree/scATAC-pro_v1.3.0 (URL)