Published April 20, 2021
| Version v0.4.3
Software
Open
NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport
- 1. The Hebrew University of Jerusalem
- 2. Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association
Description
novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.
novoSpaRc accompanies the following publication:
Gene Expression Cartography
M. Nitzan, N. Karaiskos, N. Friedman, N. Rajewsky
Files
rajewsky-lab/novosparc-v0.4.3.zip
Files
(62.9 MB)
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md5:6d370c213b902b2bfcb8214177ddc1e4
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Additional details
Related works
- Is supplement to
- https://github.com/rajewsky-lab/novosparc/tree/v0.4.3 (URL)