Revision of Family Megacalanidae (Copepoda: Calanoida)

Revision of Family Megacalanidae (Copepoda: Calanoida)

Janet M. Bradford-Grieve, Leocadio Blanco-Bercial, Geoffrey A. Boxshall

APPENDIX

Contents of the appendix:

1. PCR protocols: table indicating the PCR conditions for each marker.
2. AlignmentMrBayes.nex: nexus file containing the alignment used for the phylogeny, the partitioning by marker, and the MrBayes blocks. The alignment can be exported into fasta file using, for example, PGDSpider http://www.cmpg.unibe.ch/software/PGDSpider/
3. RAxML_commands: contains the commands used for the RAxML run
4. partS: partition used for the RAxML run
5. MrBayesTree.con: consensus phylogenetic tree from MrBayes
6. RAxMLTree_bipartitionsBranchLabels: raw phylogenetic tree from RAxML
7. MP_tree.nwk: Maximum Parsimony molecular-based tree, newick format.
8. NJ_tree.nwk: Neighbour Joining tree, newick format