Semi-simulated dataset of indel calling tool evaluation
Description
The semi-simulated datasets used in Ning Wang, et al.
5X_100bp_read1.fq.gz & 5X_100bp_read1.fq.gz: 5X coverage, 100bp read length semi-simulated paired-end sequencing FASTQ files.
30X_100bp_read1.fq.gz & 30X_100bp_read1.fq.gz: 30X coverage, 100bp read length semi-simulated paired-end sequencing FASTQ files.
30X_250bp_read1.fq.gz & 30X_250bp_read1.fq.gz: 30X coverage, 250bp read length semi-simulated paired-end sequencing FASTQ files.
60X_100bp_read1.fq.gz & 60X_100bp_read1.fq.gz: 60X coverage, 100bp read length semi-simulated paired-end sequencing FASTQ files.
Haplotype_1_no_gap.fa & Haplotype_2_no_gap.fa: the semi-simulated dipoid human genome hg19 chromosome 1, including HuRef indels used in Ning Wang, et al.
Indels_truthset.txt: types, position, size and genotype of HuRef indels used in Ning Wang, et al.
Files
Indels_truthset.txt
Files
(27.8 GB)
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