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Published March 19, 2021 | Version v1.6.2
Software Open

bactopia/bactopia: v1.6.2

Authors/Creators

  • 1. Emory University
  • 2. Faculty of Computer Science, Dalhousie University

Description

v1.6.2 bactopia/bactopia "Fuscina" - 2021/03/19 Added
  • inputs are checked to be gzipped (this does not include FOFN)
  • --skip_amr to skip AMRFinder+ analysis
  • new bactopia tool for hicap
  • unicycler can be used for Illumina reads only (--assembler unicycler)
Fixed
  • AMRFinder+ software and database version mismatch
  • check-fastqs.py syntax errors with prints
  • ismapper tool processing of include/exclude files

Files

bactopia/bactopia-v1.6.2.zip

Files (45.1 MB)

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md5:6d02265604910750f559e34aeab779c6
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Additional details

Related works

Is supplement to
https://github.com/bactopia/bactopia/tree/v1.6.2 (URL)