Published March 17, 2021
| Version v1
Journal article
Restricted
Nine new Pristionchus (Nematoda: Diplogastridae) species from China
Description
Kanzaki, Natsumi, Herrmann, Matthias, Weiler, Christian, Röseler, Waltraud, Theska, Tobias, Berger, Jürgen, Rödelsperger, Christian, Sommer, Ralf J. (2021): Nine new Pristionchus (Nematoda: Diplogastridae) species from China. Zootaxa 4943 (1): 1-66, DOI: 10.11646/zootaxa.4943.1.1
Files
Restricted
The record is publicly accessible, but files are restricted to users with access.
Linked records
Additional details
Identifiers
- URL
- https://www.checklistbank.org/dataset/7409
- LSID
- urn:lsid:zoobank.org:pub:A603FBF3-FB8D-4BB0-A738-1BD18B0FADAD
- LSID
- urn:lsid:plazi.org:pub:FFA0FF8AFFFB905BDC76372EFFBEFFD0
- URL
- http://publication.plazi.org/id/FFA0FF8AFFFB905BDC76372EFFBEFFD0
References
- Baskaran, P., Rodelsperger, C., Prabh, N., Serobyan, V., Markov, G.V., Hirsekorn, A. & Dieterich, C. (2015) Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus. BMC Evolutionary Biology, 15, 185. https://doi.org/10.1186/s12862-015-0466-2
- Dieterich, C., Clifton, S.W., Schuster, L.N., Chinwalla, A., Delehaunty, K., Dinkelacker, I., Fulton, L., Fulton, R., Godfrey, J., Minx, P., Mitreva, M., Roeseler, W., Tian, H., Witte, H., Yang, S.P., Wilson, R.K. & Sommer, R.J. (2008) The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism. Nature Genetics, 40, 1193-1198. https://doi.org/10.1038/ng.227
- Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792-1797. https://doi.org/10.1093/nar/gkh340
- Ekseth, O.K., Kuiper M. & Mironov, V. (2014) orthAgogue: an agile tool for the rapid prediction or orthology relations. Bioinformatics, 30, 734-736. https://doi.org/10.1093/bioinformatics/btt582
- Grabherr, M.G., Haas, B.J., Yassour, M., Levin, J.Z., Thompson, D.A., Amit, I., Adiconis, X., Fan, L., Raychowdhury, R., Zeng, Q., Chen, Z., Mauceli, E., Hacohen, N., Gnirke, A., Rhind, N., di Palma, F., Birren, B.W., Nusbaum, C., Lindblad-Toh, K., Friedman, N. & Regev, A. (2011) Full length transcriptomics assembly from RNA-seq data without a reference genome. Nature Biotechnology, 29, 644-652. https://doi.org/10.1038/nbt.1883
- Herrmann, M., Mayer, W.E. & Sommer, R.J. (2006a) Nematodes of the genus Pristionchus are closely associated with scarab beetles and the Colorado potato beetle in Western Europe. Zoology, 109, 96-108. https://doi.org/10.1016/j.zool.2006.03.001
- Herrmann, M., Mayer, W.E. & Sommer, R.J. (2006b) Sex, bugs and Haldane's rule: the nematode genus Pristionchus in the United States. Frontiers in Zoology, 3, 14. https://doi.org/10.1186/1742-9994-3-14
- Herrmann, M., Mayer, W.E., Hong, R.L., Kienle, S., Minasaki, R. & Sommer, R.J. (2007) The nematode Pristionchus pacificus (Nematoda: Diplogastridae) is associated with the Oriental beetle Exomala orientalis (Coleoptera: Scarabaeidae) in Japan. Zoological Science, 24, 883-889. https://doi.org/10.2108/zsj.24.883
- Herrmann, M., Weiler, C., Rodelsperger, C., Kanzaki, N. & Sommer, R.J. (2016) Two new Pristionchus species (Nematoda: Diplogastridae) from Taiwan are part of a species-cluster representing the closest known relatives of the model organism P. pacificus. Zoological Studies, 55, 48. https://doi.org/10.6620/ZS.2016.55-48
- Herrmann, M., Kanzaki, N., Weiler, C., Yoshida, K., Rodelsperger, C. & Sommer, R.J. (2019) Two new Species of Pristionchus (Nematoda: Diplogastridae) include the Gonochoristic Sister Species of P. fissidentatus. Journal of Nematology, 51, 1-14. https://doi.org/10.21307/jofnem-2019-024
- Hooper, D.J. (1986) Handling, fixing, staining and mounting nematodes. In: Southey, J.F. (Ed.), Laboratory methods for work with plant and soil nematodes. Her Majesty's Stationally Office, London, pp. 59-80.
- Kanzaki, N. (2013) Simple methods for morphological observation of nematodes. Nematological Research, 43, 15-17. https://doi.org/10.3725/jjn.43.15
- Kanzaki, N. & Giblin-Davis, R.M. (2015) Diplogastrid systematics and phylogeny. In: Sommer, R.J. (Ed.), Pristionchus pacificus-a nematode model for comparative and evolutionary biology Brill, Leiden. pp.43-76. https://doi.org/10.1163/9789004260306_004
- Kanzaki, N., Ragsdale, E., Herrmann, M. & Sommer, R.J. (2012a) Two new species of Pristionchus (Rhabditida: Diplogastridae) P. fissidentatus n. sp. from Nepal and La Reunion island and P. elegans n. sp. from Japan. Journal of Nematology, 44, 80-90. [PMC free article, PubMed, Google Scholar]
- Kanzaki, N., Ragsdale, E. J., Herrmann, M., Mayer, W.E. & Sommer, R.J. (2012b) Description of three Pristionchus species (Nematoda: Diplogastridae) from Japan that form a cryptic species complex with the model organism P. pacificus. Zoological Science, 29, 403-417. https://doi.org/10.2108/zsj.29.403
- Kanzaki, N., Ragsdale, E.J., Herrmann, M., Mayer, W.E., Tanaka, R. & Sommer, R.J. (2012c) Parapristionchus giblindavisi n. gen., n. sp. (Rhabditida: Diplogastridae) isolated from stag beetles (Coleoptera: Lucanidae) in Japan. Nematology,14: 933-947. https://doi.org/10.1163/156854112X635878
- Kanzaki, N., Ragsdale, E.J., Herrmann, M., Roseler, W. & Sommer, R.J. (2013a) Two new species of Pristionchus (Nematoda: Diplogastridae) support the biogeographic importance of Japan for the evolution of the genus Pristionchus and the model system P. pacificus. Zoological Science, 30, 680-692. https://doi.org/10.2108/zsj.30.680
- Kanzaki, N., Ragsdale, E.J., Herrmann, M., Roeseler, W. & Sommer, R.J. (2013b) Pristionchus bucculentus n. sp. (Rhabditida: Diplogastridae) isolated from a shining mushroom beetle (Coleoptera: Scaphidiidae) in Hokkaido, Japan. Journal of Nematology, 45, 78-86.
- Kanzaki, N., Ragsdale, E.J., Herrmann, M., Susoy, V., & Sommer, R.J. (2013c) Two androdioecious and one dioecious new species of Pristionchus (Nematoda: Diplogastridae): new reference points for the evolution of reproductive mode. Journal of Nematology, 45, 172-194.
- Kanzaki, N., Ragsdale, E.J., Herrmann, M., & Sommer, R.J. (2014) Two new and two recharacterized species resulting from a radiation of Pristionchus (Nematoda: Diplogastridae) in Europe. Journal of Nematology, 46, 60-74.
- Kanzaki, N., Herrmann, M., Yoshida ,K., Weiler, C., Rodelsperger, C. & Sommer, R.J. (2018) Samplings of Millipedes in Japan and Scarab Beetles in Hong Kong result in five new Species of Pristionchus (Nematoda: Diplogastridae). Journal of Nematology, 50, 4. https://doi.org/10.21307/jofnem-2018-044
- Kreis, H.A. (1932) Beitrage zur Kenntnis pflanzenparasitischer Nematoden. Zeitschrift fur Parasitenkunde, 5, 184-194. https://doi.org/10.1007/BF02120641
- Li, P., Dai, C., Bao, H., Chen, L., Gao, D., Wang, G., Wang, J., Wang, H., Yedid, G. & Zhang, K. (2015) A new species of Pristionchus (Rhabditida: Diplogastridae) and its bacterial symbiont from Yixing, China. Journal of Nematology, 47, 190-197.
- Morgan, K., McGaughran, A., Villate, L., Herrmann, M., Witte, H., Bartelmes, G., Rochat, J. & Sommer, R.J. (2012) Multi locus analysis of Pristionchus pacificus on La Reunion Island reveals an evolutionary history shaped by multiple introductions, constrained dispersal events and rare out-crossing. Molecular Ecology, 21, 250-266. https://doi.org/10.1111/j.1365-294X.2011.05382.x
- Ragsdale, E., Kanzaki, N., Roeseler, W., Herrmann, M. & Sommer, R.J. (2013) Three new species of Pristionchus (Nematoda: Diplogastridae) show morphological divergence through evolutionary intermediates of a novel feeding polymorphism. Zoological Journal of the Linnean Society, 168, 671-698. https://doi.org/10.1111/zoj.12041
- Ragsdale, E.J., Kanzaki, N. & Herrmann, M. (2015) Taxonomy and natural history: the genus Pristionchus. In: Sommer, R.J. (Ed.), Pristionchus pacificus-a nematode model for comparative and evolutionary biology. Brill, Leiden, pp. 77-120. https://doi.org/10.1163/9789004260306_005
- Rodelsperger, C., Meyer, J.M., Prabh, N., Lanz, C., Bemm, F. & Sommer, R.J. (2017) Single-molecule sequencing reveals the chromosome-scale genomic architecture of the nematode model organism Pristionchus pacificus. Cell Reports, 21, 834-844. https://doi.org/10.1016/j.celrep.2017.09.077
- Rodelsperger, C., Roseler, W., Prabh, N., Yoshida, K., Weiler, C., Herrmann, M. & Sommer, R.J. (2018) Phylotransciptomics of Pristionchus nematodes reveals parallel gene loss in six hermaphroditic lineages. Current Biology, 28: 3123-3127. https://doi.org/10.1016/j.cub.2018.07.041
- Schlager, B., Wang, X., Braach, G. & Sommer, R.J. (2009) Molecular cloning of a dominant roller mutant and establishment of DNA-mediated transformation in the nematode model Pristionchus pacificus. Genesis, 47, 300-304. https://doi.org/10.1002/dvg.20499
- Sommer, R.J. (2009) The future of evo-devo: model systems and evolutionary theory. Nature Revue Genetics, 10, 416-422. https://doi.org/10.1038/nrg2567
- Sommer, R.J. (2015) Integrative evolutionary biology and mechanistic approaches in comparative biology. In: Sommer, R.J. (Ed.), Pristionchus pacificus-a nematode model for comparative and evolutionary biology. Brill, Leiden, pp. 19-41. https://doi.org/10.1163/9789004260306_003
- Sommer, R.J., Carta, L.K., Kim, S.Y. & Sternberg, P.W. (1996) Morphological, genetic and molecular description of Pristionchus pacificus n. sp. (Nematoda: Neodiplogastridae). Fundamental and Applied Nematology, 19, 511-521.
- Sommer, R.J., Dardiry, M., Lenuzzi, M., Namdeo, S., Renahan, T., Sieriebriennikov, B. & Werner, M. (2017) The genetics of phenotypic plasticity in nematode feeding structures. Open Biology, 7, 160332. https://doi.org/10.1098/rsob.160332
- Stamatakis, A. (2014) RaxML version 8: atool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
- Sudhaus, W. & Furst von Lieven, A. (2003) A phylogenetic classification and catalogue of the Diplogastridae (Secernentea, Nematoda). Journal of Nematode Morphology and Systematics, 6, 43-90.
- Susoy, V., Ragsdale, E.J., Kanzaki, N. & Sommer, R.J. (2015) Rapid diversification associated with a macroevolutionary pulse of developmental plasticity. eLIFE, 4, e05463. https://doi.org/10.7554/eLife.05463
- Susoy, V., Herrmann, M., Kanzaki, N., Kruger, M., Nguyen, C.N., Rodelsperger, C., Roseler, W., Weiler, C., Giblin-Davis, R.M., Ragsdale, E.J. & Sommer, R.J. (2016) Large-scale diversification without genetic isolation in nematode symbionts of figs. Science Advance, 2, e1501031. https://doi.org/10.1126/sciadv.1501031
- Tian, H., Schlager, B., Xiao, H. & Sommer, R.J. (2008) Wnt signaling induces vulva development in the nematode Pristionchus pacificus. Current Biology, 18, 142-146. https://doi.org/10.1016/j.cub.2007.12.048
- Weadick, C.J. & Sommer, R.J. (2016) Mating system transitions drive lifespan evolution in Pristionchus nematodes. American Naturalist, 187, 517-529. https://doi.org/10.1086/685283
- Witte, H., Moreno, E., Rodelsperger, C., Kim, J., Kim, J.-S., Streit, A. & Sommer, R. J. (2015) Gene inactivation using the CRISPR/Cas9 system in the nematode Pristionchus pacificus. Development, Genes & Evolution, 225, 55-62. https://doi.org/10.1007/s00427-014-0486-8
- Yoshida, K., Herrmann, M., Kanzaki, N., Weiler, C., Rodelsperger, C. & Sommer, R.J. (2018) Two new species of Pristionchus (Nematoda: Diplogastridae) from Taiwan and the definition of the pacificus species-complex sensu stricto. Journal of Nematology, 50, 355-368. https://doi.org/10.21307/jofnem-2018-015