CliMA/Oceananigans.jl: v0.53.2

Diff since v0.53.1

Closed issues:

• Ability to run in hydrostatic mode. (#72)
• Upgrade to single/unified stretched vertical grid spacing 3D elliptic solver? (#211)
• Setup with DifferentialEquations.jl time steppers? (#391)
• Checkpointer fails if boundary condition is a CuArray (#420)
• Avoid need for data in user-interaction with fields through dispatch on Colon indices (#458)
• More friendly error messages when types are passed to Model instead of objects (#465)
• Non-trivial bathymetry (#530)
• Free surface (#580)
• Compressible atmospheric model (#605)
• Architecture struct should hold thread-block layout information (#624)
• Functions common to many submodules should be defined at top-level (#641)
• Value and gradient boundary conditions cannot be set with a stretched grid (#667)
• Internal wave verification experiment (#674)
• User interface for adding topography/boundaries (#694)
• Documentation of vertically-stretched grid notation (#696)
• Simulation does not stop at stop_iteration, in general (#702)
• Making it easier to set up and configure scripts with checkpointing on clusters with time limits (#779)
• Translate fill_halo_regions kernels to KernelAbstractions kernel language (#811)
• NetCDFOutputWriter constructor fails if attributes or dimensions are not specified (#885)
• Fill halo regions in set!(model, ...)? (#1150)
• Abstraction for domains tilted with respect to gravitational_acceleration (#1151)
• Convert at least one or two examples to use NetCDF (#1157)
• Add documentation section on how to run tests (#1176)
• Sponge layer not behaving as expected (#1203)
• Buildkite for both pull requests and pushes? (#1263)
• about Halo point (#1286)
• Adapt cell_advection_timescale for ShallowWaterModel (#1307)
• GPU architecture and plan_forward_transform (#1317)
• Rename Bickley_jet_shallow_water to shallow_water_Bickley_jet? (#1470)
• Triggers tagbot to register update to v0.53.1 (#1473)
• shallow water on GPUs (#1477)

Merged pull requests:

• Support for tilting gravity (#1242) (@ali-ramadhan)
• Conformal cubed sphere (#1417) (@ali-ramadhan)
• Distributed shallow water model (#1430) (@ali-ramadhan)
• Flux boundary conditions for HydrostaticFreeSurfaceModel and barotropic gyre validation experiment (#1433) (@glwagner)
• Improved fill_halo_regions (#1444) (@glwagner)
• CompatHelper: bump compat for "MPI" to "0.17" (#1472) (@github-actions[bot])
• CompatHelper: add new compat entry for "CubedSphere" at version "0.1" (#1474) (@github-actions[bot])
• CompatHelper: add new compat entry for "Rotations" at version "1.0" (#1475) (@github-actions[bot])
• Changing the name to shallow water Bickley jet (#1476) (@francispoulin)
• Revert "Improved fill_halo_regions" (#1484) (@ali-ramadhan)
• Generalizes budget tests for Flux boundary conditions to every topology and boundary (#1486) (@glwagner)
• Some bug fixes for VerticallyStretchedGrids (#1487) (@tomchor)