Published March 14, 2021
| Version v1
Dataset
Open
miRNA target finder training datasets
Description
Datasets needed to run the Galaxy training: miRNA target finder in Arabidopsis thaliana
Files
Files
(1.0 GB)
| Name | Size | Download all |
|---|---|---|
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md5:eb1b6884074e64f4535136ce8e6d39c7
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102.8 MB | Download |
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md5:70c837a2224b5fc604ebeaec5425697a
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38.7 MB | Download |
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md5:abaa12d0072baabe8a7957f4cfd17246
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7.7 kB | Download |
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md5:8956c11d5176e661f47140ad49676689
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27.7 kB | Download |
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md5:abaa12d0072baabe8a7957f4cfd17246
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7.7 kB | Download |
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md5:7a0a941389eed0ac95ae8b7328afc4be
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65.7 MB | Download |
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md5:7dadbb067f1fceed3dfe0a7be7f35135
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71.6 MB | Download |
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md5:c34dbc506bc9ebef952d07b7f9ec0d42
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71.2 MB | Download |
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md5:030f18f83b3cfdb4e6373118940498b4
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71.0 MB | Download |
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md5:4812e5cb3c3acfc881f6ae83d0efaaf6
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84.7 MB | Download |
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md5:a8492718b292dfea0efd7c76ebdb9c10
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70.8 MB | Download |
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md5:38c4df2cd99ebc5f83df1bcaf27963a5
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77.2 MB | Download |
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md5:ad13df58998cef93fe7e5438e3dd723c
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78.7 MB | Download |
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md5:27cb1ff1be42d89ad93832acc05ae5a2
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87.0 MB | Download |
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md5:624a7bb356ff4dc562a2ffb4c36ec66e
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47.0 MB | Download |
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md5:93c352ffb59b95b919d0f7cb1c302dfa
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7.9 kB | Download |
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md5:9d960dc5a79a9907ffd84280b416fedf
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157.9 MB | Download |
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md5:99ff1d82f862a04778ddbcfef7c64563
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942 Bytes | Download |
Additional details
Related works
- Is derived from
- Dataset: 10.1007/s13258-020-00964-2 (DOI)
- Dataset: 10.7554/eLife.03031 (DOI)
- Dataset: 10.1101/051938 (DOI)
- Dataset: 10.1093/nar/gkz894 (DOI)
- Dataset: 10.1093/nar/gkr1090 (DOI)
References
- Park, S. Y., Choi, J. H., Oh, D. H., Johnson, J. C., Dassanayake, M., Jeong, D. H., & Oh, M. H. (2020). Genome-wide analysis of brassinosteroid responsive small RNAs in Arabidopsis thaliana. Genes & Genomics, 42(8), 957-969.
- Oh, Eunkyoo, et al. "Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl." elife 3 (2014): e03031.
- Zhang, R., Calixto, C.P.G., Marquez, Y., Venhuizen, P., Tzioutziou, N.A., Guo, W., Spensley, M., Frei dit Frey, N., Hirt, H., James, A.B., Nimmo, H.G., Barta, A., Kalyna, M., Brown, J.W.S (2016) AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data. bioRxiv doi: http://dx.doi.org/10.1101/051938
- PmiREN: a comprehensive encyclopedia of plant miRNAs. Z Guo, Z Kuang, Y Wang, Y Zhao, Y Tao, C Cheng, J Yang, X Lu, C Hao, T Wang, X Cao, J Wei, L Li, and X Yang. Nucleic Acids Res. 2019. doi: 10.1093/nar/gkz894.
- Lamesch, P., Berardini, T. Z., Li, D., Swarbreck, D., Wilks, C., Sasidharan, R., ... & Huala, E. (2012). The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic acids research, 40(D1), D1202-D1210.