Published March 11, 2021 | Version v1
Presentation Open

iPRG-2020: Proteome Informatics Research Group Study on Metaproteomics

Creators

  • 1. University of Minnesota
  • 2. University of Texas Health Science Center at San Antonio
  • 3. Janssen Pharmaceuticals, Horsham, PA
  • 4. Thermo Fisher Scientific, Austin, TX
  • 5. Institute for Systems Biology, Seattle, WA
  • 6. Royal Institute of Technology, Stockholm, Sweden
  • 7. Brigham Young University, Provo, UT
  • 8. European Bioinformatics Institute, Hinxton, UK
  • 9. Leiden University Medical Center, The Netherlands

Description

Metaproteomics – the characterization of proteins expressed by microbiomes – presents a range of technical challenges, from sampling to data processing and interpretation. In the iPRG 2020 study, we investigated the status of metaproteomics data analysis workflows by posing questions to the metaproteomics studies in two studies. In two phases of the study, the participants were asked to deduce the organisms or taxa in a metaproteomics sample (“What species are represented in the sample?”) and what biological phenomena have taken place (“What interactions took place between the species in the mixture?”). The outputs from these studies will be presented at the RG session at ABRF 2021.

Notes

Research Group Presentation at the 2021 Virtual Association of Biomolecular Resource Facilities (ABRF) Annual Meeting.

Files

ABRF 2021 March iPRG Study 03082021.pdf

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